Detailed information NTG0467955

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6J78_RS07050
• Genome accession: NZ_CP069542
• Coordinates: 1503274..1504266 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1248
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1498274..1509266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J78_RS07020 (I6J78_07025)	ispD	1498335..1499045 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6J78_RS07025 (I6J78_07030)	ispF	1499045..1499524 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6J78_RS07030 (I6J78_07035)	truD	1499521..1500570 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
I6J78_RS07035 (I6J78_07040)	surE	1500551..1501312 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6J78_RS07040 (I6J78_07045)	pcm	1501306..1501932 (+)	627	WP_158138119.1	protein-L-isoaspartate O-methyltransferase	-
I6J78_RS07045 (I6J78_07050)	nlpD	1502117..1503211 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
I6J78_RS07050 (I6J78_07055)	rpoS	1503274..1504266 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6J78_RS07055 (I6J78_07060)	ygbN	1504360..1505724 (-)	1365	WP_000104459.1	GntP family transporter	-
I6J78_RS07060 (I6J78_07065)	ygbM	1505813..1506589 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
I6J78_RS07065 (I6J78_07070)	ygbL	1506594..1507232 (-)	639	WP_001278994.1	aldolase	-
I6J78_RS07070 (I6J78_07075)	otnK	1507229..1508491 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=467955 I6J78_RS07050 WP_000081550.1 1503274..1504266(+) (rpoS) [Escherichia coli strain FDAARGOS_1248]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=467955 I6J78_RS07050 WP_000081550.1 1503274..1504266(+) (rpoS) [Escherichia coli strain FDAARGOS_1248]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715