Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HS063_RS04125 Genome accession   NZ_CP059235
Coordinates   804652..805803 (-) Length   383 a.a.
NCBI ID   WP_409039286.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 0596     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 799652..810803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS063_RS04095 (HS063_04075) rplK 799906..800334 (-) 429 WP_240020339.1 50S ribosomal protein L11 -
  HS063_RS04100 (HS063_04080) nusG 800567..801130 (-) 564 WP_006248760.1 transcription termination/antitermination protein NusG -
  HS063_RS04105 (HS063_04085) secE 801132..801554 (-) 423 WP_409039285.1 preprotein translocase subunit SecE -
  HS063_RS04110 (HS063_04090) - 801667..802692 (-) 1026 WP_240020341.1 LacI family DNA-binding transcriptional regulator -
  HS063_RS04115 (HS063_04095) - 802923..803192 (+) 270 WP_006248763.1 PTS sugar transporter subunit IIB -
  HS063_RS04120 (HS063_04100) - 803205..804557 (+) 1353 WP_409038108.1 PTS ascorbate transporter subunit IIC -
  HS063_RS04125 (HS063_04105) dprA 804652..805803 (-) 1152 WP_409039286.1 DNA-processing protein DprA Machinery gene
  HS063_RS04130 (HS063_04110) def 805891..806403 (+) 513 WP_006248765.1 peptide deformylase -
  HS063_RS04135 (HS063_04115) rfaD 806497..807426 (+) 930 WP_240020345.1 ADP-glyceromanno-heptose 6-epimerase -
  HS063_RS04140 (HS063_04120) fabA 807494..808024 (-) 531 WP_240028514.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  HS063_RS04145 (HS063_04125) - 808137..809774 (-) 1638 WP_409039287.1 AAA family ATPase -
  HS063_RS04150 (HS063_04130) matP 809867..810313 (+) 447 Protein_784 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 42607.43 Da        Isoelectric Point: 5.0805

>NTDB_id=467918 HS063_RS04125 WP_409039286.1 804652..805803(-) (dprA) [Mannheimia haemolytica strain 0596]
MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQIGWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLF
DENYPFLLKQISTAPPLIYVKGNVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQXIVM
EQGITIAVLXGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIISGLSLGTLVIEATLNSGSLITA
RYALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVEGVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAK
NLPSLTACQQQIYQHISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=467918 HS063_RS04125 WP_409039286.1 804652..805803(-) (dprA) [Mannheimia haemolytica strain 0596]
ATGGCATATCACTACGATTTATTACGATTATTACAAGTGCCGCAAATGGGGGCTCAACGTATAGGGCGATTATTGGCGGA
ACTCAATTTTGCTGAATTTTGCCACTATGACAAACTTCAACTCAAACAAATAGGTTGGAATGAAAAGCAAATTCAACGTT
GGTTTAATCCTGATCAAAAGTGGATTGATCAGGCGATGACTTGGTCAGAATTGCCAAATCAGCAAATTGTGACACTCTTT
GATGAAAATTATCCGTTTCTCTTAAAACAAATTTCGACTGCGCCACCGTTAATTTATGTAAAGGGAAATGTGGAAAGCCT
TTCTCTGCCACAAATTGCGATTGTTGGCAGCCGAGACTATTCTCATTATGGTGAATATTGGGCTGGGCAATTTGCTGCCG
AATTAGCTCGCCATAATATTATCATTACCAGCGGTTTAGCCATTGGTATTGACGGTTTTGCCCATCAANAAATCGTTATG
GAACAAGGCATAACGATTGCCGTGTTAGNNGGGAGTGGATTAAATCAAGTCTATCCTGCTCGCCATAAAAAATTAGCCGA
ACAAATTGTTGATTTAGGTGGTGCATTGGTGTCGGAGTTCTCGCCTAATCAGCCGCCGGTGGCAGAAAATTTTCCTCGTC
GTAATCGAATTATTAGTGGCTTATCGCTCGGCACTTTAGTTATTGAAGCAACGCTTAATAGTGGTTCACTGATTACCGCT
CGTTATGCCCTTGAACAAGGTAGGGAAGTGTTTGCGTTACCGAATGCGGTACAAAACCCTTACGCACAAGGTTGCCACAA
GCTAATTAAAGAAGGGGCATTGCTCGTGGAAGGTGTGGAAGATATTTTAGAGGTGGTCGCCTCGCAATATCAACCTCAGC
AAATCCCTTTGTTTGATGAGTCTAAGCCAACAGTAAGCACATCTTTACAAGCGGTCAAAAACAGCGAAAAATTCGCAAAA
AATCTGCCAAGTCTGACCGCTTGCCAGCAGCAAATTTATCAGCATATCAGCTTAGAGCCGATGGCAATTGATGATTTAGC
CAAAGTTACGGAGTTGACGATTGAAATATTGCTGGTTGAATTACTGGGTCTGGAATTAGCCGGTGTGATTAAACAAGTGA
GTGGGGGGTATGTGATGGATAATGGGTATTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-376)

DNA recombination-mediator protein A (DNA_processg_A)

(73-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.421

99.217

0.728
  dprA Haemophilus influenzae Rd KW20

51.156

90.339

0.462
  dprA Vibrio campbellii strain DS40M4

44.624

97.128

0.433
  dprA Vibrio cholerae strain A1552

42.473

97.128

0.413
  dprA Legionella pneumophila strain ERS1305867

40.173

90.339

0.363