Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HMPREF4655_RS01220 Genome accession   NC_017360
Coordinates   253371..254684 (+) Length   437 a.a.
NCBI ID   WP_000653547.1    Uniprot ID   -
Organism   Helicobacter pylori 35A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 248371..259684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF4655_RS01200 (HMPREF4655_20249) crdR 248691..249332 (+) 642 WP_001169806.1 copper response regulator transcription factor CrdR -
  HMPREF4655_RS01205 (HMPREF4655_20250) crdS 249298..250500 (+) 1203 WP_080005285.1 copper-sensing histidine kinase CrdS -
  HMPREF4655_RS01210 (HMPREF4655_20251) - 250503..251897 (+) 1395 WP_000954081.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HMPREF4655_RS01215 (HMPREF4655_20252) - 251908..253374 (+) 1467 WP_000349774.1 replicative DNA helicase -
  HMPREF4655_RS01220 (HMPREF4655_20253) comEC/comE3 253371..254684 (+) 1314 WP_000653547.1 ComEC/Rec2 family competence protein Machinery gene
  HMPREF4655_RS01225 (HMPREF4655_20254) mqnP 254713..255597 (+) 885 WP_000913966.1 menaquinone biosynthesis prenyltransferase MqnP -
  HMPREF4655_RS01230 (HMPREF4655_20255) - 255590..256084 (+) 495 WP_014534527.1 hypothetical protein -
  HMPREF4655_RS01235 (HMPREF4655_20256) - 256097..256600 (+) 504 WP_000953081.1 DUF6115 domain-containing protein -
  HMPREF4655_RS01240 (HMPREF4655_20257) - 256597..257403 (+) 807 WP_000561111.1 phosphatidylserine decarboxylase -
  HMPREF4655_RS01245 (HMPREF4655_20258) nadA 257390..258400 (+) 1011 WP_001141984.1 quinolinate synthase NadA -
  HMPREF4655_RS01250 (HMPREF4655_20259) nadC 258400..259221 (+) 822 WP_000404035.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50156.08 Da        Isoelectric Point: 9.8572

>NTDB_id=46789 HMPREF4655_RS01220 WP_000653547.1 253371..254684(+) (comEC/comE3) [Helicobacter pylori 35A]
MKDKTFQGAFELLATPKEYLLCGVVLSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTLLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQTFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLFLHAVGLGSLLDSILNMPLTIPTISVSSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSTGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=46789 HMPREF4655_RS01220 WP_000653547.1 253371..254684(+) (comEC/comE3) [Helicobacter pylori 35A]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTGTTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGGGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGGGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCTCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAACCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATAGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCACGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947

Multiple sequence alignment