Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HMPREF4655_RS01085 | Genome accession | NC_017360 |
| Coordinates | 218629..218892 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori 35A | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 213629..223892
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMPREF4655_RS01060 (HMPREF4655_20215) | groES | 213926..214282 (-) | 357 | WP_000671946.1 | co-chaperone GroES | - |
| HMPREF4655_RS01065 (HMPREF4655_20216) | dnaG | 214557..216236 (+) | 1680 | WP_000601606.1 | DNA primase | - |
| HMPREF4655_RS01070 (HMPREF4655_20217) | - | 216233..217285 (+) | 1053 | WP_000721164.1 | MnmA/TRMU family protein | - |
| HMPREF4655_RS01075 (HMPREF4655_20218) | - | 217376..218203 (+) | 828 | WP_001154894.1 | DUF5718 family protein | - |
| HMPREF4655_RS01080 (HMPREF4655_20219) | comB2 | 218348..218629 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| HMPREF4655_RS01085 (HMPREF4655_20220) | comB3 | 218629..218892 (+) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| HMPREF4655_RS01090 (HMPREF4655_20221) | comB4 | 218894..221257 (+) | 2364 | WP_000890533.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HMPREF4655_RS01095 (HMPREF4655_20222) | - | 221488..222918 (+) | 1431 | WP_014534522.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=46786 HMPREF4655_RS01085 WP_000584955.1 218629..218892(+) (comB3) [Helicobacter pylori 35A]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=46786 HMPREF4655_RS01085 WP_000584955.1 218629..218892(+) (comB3) [Helicobacter pylori 35A]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |