Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HMPREF4655_RS01080 Genome accession   NC_017360
Coordinates   218348..218629 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori 35A     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 213348..223629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF4655_RS01060 (HMPREF4655_20215) groES 213926..214282 (-) 357 WP_000671946.1 co-chaperone GroES -
  HMPREF4655_RS01065 (HMPREF4655_20216) dnaG 214557..216236 (+) 1680 WP_000601606.1 DNA primase -
  HMPREF4655_RS01070 (HMPREF4655_20217) - 216233..217285 (+) 1053 WP_000721164.1 MnmA/TRMU family protein -
  HMPREF4655_RS01075 (HMPREF4655_20218) - 217376..218203 (+) 828 WP_001154894.1 DUF5718 family protein -
  HMPREF4655_RS01080 (HMPREF4655_20219) comB2 218348..218629 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HMPREF4655_RS01085 (HMPREF4655_20220) comB3 218629..218892 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  HMPREF4655_RS01090 (HMPREF4655_20221) comB4 218894..221257 (+) 2364 WP_000890533.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HMPREF4655_RS01095 (HMPREF4655_20222) - 221488..222918 (+) 1431 WP_014534522.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=46785 HMPREF4655_RS01080 WP_001272686.1 218348..218629(+) (comB2) [Helicobacter pylori 35A]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=46785 HMPREF4655_RS01080 WP_001272686.1 218348..218629(+) (comB2) [Helicobacter pylori 35A]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAACTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment