Detailed information NTG0467833

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6J82_RS01435
• Genome accession: NZ_CP069528
• Coordinates: 314772..315764 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1252
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 309772..320764

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J82_RS01405 (I6J82_01405)	ispD	309833..310543 (+)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6J82_RS01410 (I6J82_01410)	ispF	310543..311022 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6J82_RS01415 (I6J82_01415)	truD	311019..312068 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
I6J82_RS01420 (I6J82_01420)	surE	312049..312810 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6J82_RS01425 (I6J82_01425)	pcm	312804..313430 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6J82_RS01430 (I6J82_01430)	nlpD	313615..314709 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
I6J82_RS01435 (I6J82_01435)	rpoS	314772..315764 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6J82_RS01440 (I6J82_01440)	-	315942..316493 (-)	552	WP_001179442.1	flavodoxin family protein	-
I6J82_RS01445 (I6J82_01445)	-	316718..317761 (+)	1044	WP_001609261.1	MBL fold metallo-hydrolase	-
I6J82_RS01450 (I6J82_01450)	ygbN	317904..319268 (-)	1365	WP_000104433.1	GntP family transporter	-
I6J82_RS01455 (I6J82_01455)	ygbM	319357..320133 (-)	777	WP_001539449.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=467833 I6J82_RS01435 WP_000081550.1 314772..315764(+) (rpoS) [Escherichia coli strain FDAARGOS_1252]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=467833 I6J82_RS01435 WP_000081550.1 314772..315764(+) (rpoS) [Escherichia coli strain FDAARGOS_1252]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715