Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPSAT_RS06430 Genome accession   NC_017359
Coordinates   1317415..1318728 (-) Length   437 a.a.
NCBI ID   WP_000653608.1    Uniprot ID   -
Organism   Helicobacter pylori Sat464     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1312415..1323728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSAT_RS06400 (HPSAT_06565) nadC 1312878..1313699 (-) 822 WP_000404043.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPSAT_RS06405 (HPSAT_06570) nadA 1313699..1314709 (-) 1011 WP_001141874.1 quinolinate synthase NadA -
  HPSAT_RS06410 (HPSAT_06575) - 1314699..1315502 (-) 804 WP_000561118.1 phosphatidylserine decarboxylase -
  HPSAT_RS06415 (HPSAT_06580) - 1315499..1316002 (-) 504 WP_000953077.1 DUF6115 domain-containing protein -
  HPSAT_RS06420 (HPSAT_06585) - 1316015..1316509 (-) 495 WP_014534461.1 hypothetical protein -
  HPSAT_RS06425 (HPSAT_06590) mqnP 1316502..1317386 (-) 885 WP_000913954.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPSAT_RS06430 (HPSAT_06595) comEC/comE3 1317415..1318728 (-) 1314 WP_000653608.1 ComEC/Rec2 family competence protein Machinery gene
  HPSAT_RS06435 (HPSAT_06600) - 1318725..1320191 (-) 1467 WP_000349782.1 replicative DNA helicase -
  HPSAT_RS06440 (HPSAT_06605) - 1320202..1321596 (-) 1395 WP_000954045.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPSAT_RS06445 (HPSAT_06610) crdS 1321599..1322801 (-) 1203 WP_079994529.1 copper-sensing histidine kinase CrdS -
  HPSAT_RS06450 (HPSAT_06615) crdR 1322767..1323408 (-) 642 WP_001169799.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50127.09 Da        Isoelectric Point: 9.7790

>NTDB_id=46778 HPSAT_RS06430 WP_000653608.1 1317415..1318728(-) (comEC/comE3) [Helicobacter pylori Sat464]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKAKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRDFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILSMPLTIPTISISSPLWLLGVHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=46778 HPSAT_RS06430 WP_000653608.1 1317415..1318728(-) (comEC/comE3) [Helicobacter pylori Sat464]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAGCTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGTATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCGACTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTATACCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCCCA
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTGTGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCACGCGTTTCTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947

Multiple sequence alignment