Detailed information NTG0467762

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6J97_RS05475
• Genome accession: NZ_CP069522
• Coordinates: 1142605..1143597 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1267
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1137605..1148597

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J97_RS05445 (I6J97_05445)	ispD	1137666..1138376 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6J97_RS05450 (I6J97_05450)	ispF	1138376..1138855 (+)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6J97_RS05455 (I6J97_05455)	truD	1138852..1139901 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
I6J97_RS05460 (I6J97_05460)	surE	1139882..1140643 (+)	762	WP_001350156.1	5'/3'-nucleotidase SurE	-
I6J97_RS05465 (I6J97_05465)	pcm	1140637..1141263 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I6J97_RS05470 (I6J97_05470)	nlpD	1141448..1142542 (+)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
I6J97_RS05475 (I6J97_05475)	rpoS	1142605..1143597 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6J97_RS05480 (I6J97_05480)	-	1143768..1144319 (-)	552	WP_001179443.1	flavodoxin family protein	-
I6J97_RS05485 (I6J97_05485)	-	1144544..1145587 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
I6J97_RS05490 (I6J97_05490)	ygbN	1145730..1147094 (-)	1365	WP_000104433.1	GntP family transporter	-
I6J97_RS05495 (I6J97_05495)	ygbM	1147183..1147959 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=467762 I6J97_RS05475 WP_000081550.1 1142605..1143597(+) (rpoS) [Escherichia coli strain FDAARGOS_1267]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=467762 I6J97_RS05475 WP_000081550.1 1142605..1143597(+) (rpoS) [Escherichia coli strain FDAARGOS_1267]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715