Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPSAT_RS01625 Genome accession   NC_017359
Coordinates   327812..328216 (+) Length   134 a.a.
NCBI ID   WP_000599229.1    Uniprot ID   -
Organism   Helicobacter pylori Sat464     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 322812..333216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSAT_RS01590 (HPSAT_01640) - 322992..323930 (-) 939 WP_000833940.1 tetraacyldisaccharide 4'-kinase -
  HPSAT_RS01595 (HPSAT_01645) - 323927..324709 (-) 783 WP_001168220.1 NAD+ synthase -
  HPSAT_RS01605 (HPSAT_01650) ilvC 324956..325948 (+) 993 WP_001207812.1 ketol-acid reductoisomerase -
  HPSAT_RS01610 (HPSAT_01655) minD 325967..326773 (+) 807 WP_001019043.1 septum site-determining protein MinD -
  HPSAT_RS01615 (HPSAT_01660) minE 326770..327003 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HPSAT_RS01620 (HPSAT_01665) dprA 327015..327815 (+) 801 WP_000840084.1 DNA-processing protein DprA Machinery gene
  HPSAT_RS01625 (HPSAT_01670) dprB 327812..328216 (+) 405 WP_000599229.1 Holliday junction resolvase RuvX Machinery gene
  HPSAT_RS01630 (HPSAT_01675) - 328349..329218 (+) 870 WP_014534377.1 tetratricopeptide repeat protein -
  HPSAT_RS01635 (HPSAT_01680) - 329348..329686 (+) 339 WP_000699912.1 hypothetical protein -
  HPSAT_RS01640 (HPSAT_01685) - 329670..330236 (+) 567 WP_000037139.1 hypothetical protein -
  HPSAT_RS08380 - 330248..330673 (+) 426 Protein_314 glycoside hydrolase family protein -
  HPSAT_RS08190 (HPSAT_01695) - 330661..330837 (+) 177 WP_014534379.1 hypothetical protein -
  HPSAT_RS08195 (HPSAT_01700) - 330930..331115 (+) 186 WP_014534380.1 hypothetical protein -
  HPSAT_RS01660 (HPSAT_01705) - 331269..331656 (+) 388 Protein_317 DUF1294 domain-containing protein -
  HPSAT_RS01665 (HPSAT_01710) - 331656..332441 (+) 786 WP_000488069.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15105.53 Da        Isoelectric Point: 8.7221

>NTDB_id=46773 HPSAT_RS01625 WP_000599229.1 327812..328216(+) (dprB) [Helicobacter pylori Sat464]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNAHIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACGILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=46773 HPSAT_RS01625 WP_000599229.1 327812..328216(+) (dprB) [Helicobacter pylori Sat464]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCTTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCACATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGTCGGCTAGACTCTTTGAGTGCTTGTGGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.737

99.254

0.94

Multiple sequence alignment