Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I6J92_RS15705 Genome accession   NZ_CP069517
Coordinates   3273992..3274669 (+) Length   225 a.a.
NCBI ID   WP_000178172.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1262     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3268992..3279669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J92_RS15670 (I6J92_15670) gspG 3269472..3269909 (+) 438 WP_001202877.1 type II secretion system major pseudopilin GspG -
  I6J92_RS15675 (I6J92_15675) gspH 3269917..3270426 (+) 510 WP_001076033.1 type II secretion system minor pseudopilin GspH -
  I6J92_RS15680 (I6J92_15680) gspI 3270423..3270800 (+) 378 WP_001041742.1 type II secretion system minor pseudopilin GspI -
  I6J92_RS15685 (I6J92_15685) gspJ 3270793..3271380 (+) 588 WP_000610637.1 type II secretion system minor pseudopilin GspJ -
  I6J92_RS15690 (I6J92_15690) gspK 3271373..3272356 (+) 984 WP_001058529.1 type II secretion system minor pseudopilin GspK -
  I6J92_RS15695 (I6J92_15695) gspL 3272371..3273534 (+) 1164 WP_001304915.1 type II secretion system protein GspL -
  I6J92_RS15700 (I6J92_15700) gspM 3273531..3273992 (+) 462 WP_001298207.1 type II secretion system protein GspM -
  I6J92_RS15705 (I6J92_15705) pilD 3273992..3274669 (+) 678 WP_000178172.1 prepilin peptidase GspO Machinery gene
  I6J92_RS15710 (I6J92_15710) bfr 3274698..3275174 (-) 477 WP_000675504.1 bacterioferritin -
  I6J92_RS15715 (I6J92_15715) bfd 3275246..3275440 (-) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  I6J92_RS15720 (I6J92_15720) chiA 3275609..3278308 (-) 2700 WP_000773163.1 bifunctional chitinase/lysozyme -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24838.70 Da        Isoelectric Point: 7.6364

>NTDB_id=467701 I6J92_RS15705 WP_000178172.1 3273992..3274669(+) (pilD) [Escherichia coli strain FDAARGOS_1262]
MTMLLPLFILVGFIAGYFVNVMAYHLSPLEDKTALTFRQVLVHFWQKKYAWHDTAPLILCVAAAIACALAPFTPIVTGAL
FLYFCFALTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQSGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTIPTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=467701 I6J92_RS15705 WP_000178172.1 3273992..3274669(+) (pilD) [Escherichia coli strain FDAARGOS_1262]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGTCATGGCCTATCACCTCTC
GCCTTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCTGGCAAAAAAAATATGCCTGGCATGATA
CAGCGCCCCTGATACTTTGCGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATTGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGCACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTCTGGATTAATTGATTTACATGATGCGGTTTATGGCGCGGTCGCTG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCGTGGTGTGGCTGGCAAACGTTACCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATACCCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGATATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.95

100

0.382