Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6J92_RS08435 Genome accession   NZ_CP069517
Coordinates   1736136..1737563 (+) Length   475 a.a.
NCBI ID   WP_000980614.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1262     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1731136..1742563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J92_RS08395 (I6J92_08395) yeeW 1731320..1731514 (+) 195 WP_000988601.1 DUF5983 family protein -
  I6J92_RS08400 (I6J92_08400) - 1731560..1731640 (+) 81 Protein_1669 hypothetical protein -
  I6J92_RS25560 (I6J92_08405) - 1731929..1732102 (-) 174 WP_032082634.1 transposase domain-containing protein -
  I6J92_RS25565 (I6J92_08410) - 1732129..1732311 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  I6J92_RS08415 (I6J92_08415) tmaR 1732412..1732741 (-) 330 WP_000450409.1 DUF496 family protein -
  I6J92_RS08420 (I6J92_08420) yeeA 1732913..1733971 (-) 1059 WP_001200894.1 FUSC family protein -
  I6J92_RS08425 (I6J92_08425) sbmC 1734169..1734642 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  I6J92_RS08430 (I6J92_08430) dacD 1734761..1735927 (-) 1167 WP_001297905.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6J92_RS08435 (I6J92_08435) sbcB 1736136..1737563 (+) 1428 WP_000980614.1 exodeoxyribonuclease I Machinery gene
  I6J92_RS08440 (I6J92_08440) tsuB 1737606..1737833 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I6J92_RS08445 (I6J92_08445) tsuA 1737847..1738905 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  I6J92_RS08450 (I6J92_08450) plaP 1739084..1740442 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6J92_RS08455 (I6J92_08455) yoeI 1740432..1740494 (-) 63 WP_010723108.1 membrane protein YoeI -
  I6J92_RS08460 (I6J92_08460) yeeY 1740709..1741638 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  I6J92_RS08465 (I6J92_08465) yeeZ 1741684..1742508 (-) 825 WP_000754740.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.74 Da        Isoelectric Point: 5.6054

>NTDB_id=467674 I6J92_RS08435 WP_000980614.1 1736136..1737563(+) (sbcB) [Escherichia coli strain FDAARGOS_1262]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTARADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=467674 I6J92_RS08435 WP_000980614.1 1736136..1737563(+) (sbcB) [Escherichia coli strain FDAARGOS_1262]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAGAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581