Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPSAT_RS00090 | Genome accession | NC_017359 |
| Coordinates | 11803..12066 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584955.1 | Uniprot ID | K7YLH7 |
| Organism | Helicobacter pylori Sat464 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6803..17066
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSAT_RS00065 (HPSAT_00050) | groES | 7098..7454 (-) | 357 | WP_000671957.1 | co-chaperone GroES | - |
| HPSAT_RS00070 (HPSAT_00055) | dnaG | 7729..9408 (+) | 1680 | WP_000601608.1 | DNA primase | - |
| HPSAT_RS00075 (HPSAT_00060) | - | 9405..10457 (+) | 1053 | WP_000802579.1 | MnmA/TRMU family protein | - |
| HPSAT_RS00080 (HPSAT_00070) | - | 10549..11376 (+) | 828 | WP_001154883.1 | DUF5718 family protein | - |
| HPSAT_RS00085 (HPSAT_00075) | comB2 | 11522..11803 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| HPSAT_RS00090 (HPSAT_00080) | comB3 | 11803..12066 (+) | 264 | WP_000584955.1 | hypothetical protein | Machinery gene |
| HPSAT_RS00095 (HPSAT_00085) | comB4 | 12068..14431 (+) | 2364 | WP_000890540.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HPSAT_RS00100 (HPSAT_00090) | - | 14662..16092 (+) | 1431 | WP_195154951.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10048.12 Da Isoelectric Point: 9.5507
>NTDB_id=46763 HPSAT_RS00090 WP_000584955.1 11803..12066(+) (comB3) [Helicobacter pylori Sat464]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=46763 HPSAT_RS00090 WP_000584955.1 11803..12066(+) (comB3) [Helicobacter pylori Sat464]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGTAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGTAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
97.701 |
100 |
0.977 |