Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPSAT_RS00085 Genome accession   NC_017359
Coordinates   11522..11803 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori Sat464     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6522..16803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSAT_RS00065 (HPSAT_00050) groES 7098..7454 (-) 357 WP_000671957.1 co-chaperone GroES -
  HPSAT_RS00070 (HPSAT_00055) dnaG 7729..9408 (+) 1680 WP_000601608.1 DNA primase -
  HPSAT_RS00075 (HPSAT_00060) - 9405..10457 (+) 1053 WP_000802579.1 MnmA/TRMU family protein -
  HPSAT_RS00080 (HPSAT_00070) - 10549..11376 (+) 828 WP_001154883.1 DUF5718 family protein -
  HPSAT_RS00085 (HPSAT_00075) comB2 11522..11803 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPSAT_RS00090 (HPSAT_00080) comB3 11803..12066 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  HPSAT_RS00095 (HPSAT_00085) comB4 12068..14431 (+) 2364 WP_000890540.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPSAT_RS00100 (HPSAT_00090) - 14662..16092 (+) 1431 WP_195154951.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=46762 HPSAT_RS00085 WP_001272686.1 11522..11803(+) (comB2) [Helicobacter pylori Sat464]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=46762 HPSAT_RS00085 WP_001272686.1 11522..11803(+) (comB2) [Helicobacter pylori Sat464]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGCTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAAGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment