Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6J98_RS08435 Genome accession   NZ_CP069501
Coordinates   1765841..1767268 (-) Length   475 a.a.
NCBI ID   WP_074184834.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1268     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1760841..1772268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J98_RS08405 (I6J98_08405) yeeZ 1760896..1761720 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  I6J98_RS08410 (I6J98_08410) yeeY 1761766..1762695 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  I6J98_RS08415 (I6J98_08415) yoeI 1762910..1762972 (+) 63 WP_010723108.1 membrane protein YoeI -
  I6J98_RS08420 (I6J98_08420) plaP 1762962..1764320 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6J98_RS08425 (I6J98_08425) tsuA 1764499..1765557 (+) 1059 WP_063624967.1 thiosulfate utilization transporter TsuA/YeeE -
  I6J98_RS08430 (I6J98_08430) tsuB 1765571..1765798 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  I6J98_RS08435 (I6J98_08435) sbcB 1765841..1767268 (-) 1428 WP_074184834.1 exodeoxyribonuclease I Machinery gene
  I6J98_RS08440 (I6J98_08440) dacD 1767477..1768643 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6J98_RS08445 (I6J98_08445) sbmC 1768762..1769235 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  I6J98_RS08450 (I6J98_08450) yeeA 1769433..1770491 (+) 1059 WP_001200888.1 FUSC family protein -
  I6J98_RS08455 (I6J98_08455) tmaR 1770663..1770992 (+) 330 WP_000450409.1 DUF496 family protein -
  I6J98_RS08460 (I6J98_08460) - 1771093..1771275 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  I6J98_RS08465 (I6J98_08465) - 1771329..1771475 (+) 147 Protein_1667 transposase domain-containing protein -
  I6J98_RS08470 (I6J98_08470) - 1771764..1771844 (-) 81 Protein_1668 hypothetical protein -
  I6J98_RS08475 (I6J98_08475) yeeW 1771890..1772084 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54527.84 Da        Isoelectric Point: 5.4720

>NTDB_id=467595 I6J98_RS08435 WP_074184834.1 1765841..1767268(-) (sbcB) [Escherichia coli strain FDAARGOS_1268]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGENAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=467595 I6J98_RS08435 WP_074184834.1 1765841..1767268(-) (sbcB) [Escherichia coli strain FDAARGOS_1268]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGAGAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583