Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   H0232_RS03280 Genome accession   NZ_CP059160
Coordinates   630543..630980 (+) Length   145 a.a.
NCBI ID   WP_180819998.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain OBT12390     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 625543..635980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0232_RS08410 - 626033..627178 (+) 1146 WP_002854960.1 histidine kinase -
  H0232_RS08415 - 627129..627578 (+) 450 WP_227889155.1 DUF4118 domain-containing protein -
  H0232_RS03265 (H0232_03265) uvrB 627957..629930 (-) 1974 WP_002855027.1 excinuclease ABC subunit UvrB -
  H0232_RS03270 (H0232_03270) - 630084..630314 (+) 231 WP_002852327.1 hypothetical protein -
  H0232_RS03275 (H0232_03275) - 630304..630546 (+) 243 WP_002854947.1 hypothetical protein -
  H0232_RS03280 (H0232_03280) Cj0683 630543..630980 (+) 438 WP_180819998.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H0232_RS03285 (H0232_03285) priA 630962..632815 (+) 1854 WP_021137800.1 primosomal protein N' -
  H0232_RS03290 (H0232_03290) cipA 632825..634222 (-) 1398 Protein_637 DUF2972 domain-containing protein -
  H0232_RS03295 (H0232_03295) ispG 634368..635441 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16659.64 Da        Isoelectric Point: 8.1032

>NTDB_id=467572 H0232_RS03280 WP_180819998.1 630543..630980(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain OBT12390]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDAPISSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=467572 H0232_RS03280 WP_180819998.1 630543..630980(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain OBT12390]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGTTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATGCACCTATTTCTTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.621

100

0.986