Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPCU_RS06795 Genome accession   NC_017358
Coordinates   1393808..1395121 (-) Length   437 a.a.
NCBI ID   WP_000653540.1    Uniprot ID   A0AB32X9L7
Organism   Helicobacter pylori Cuz20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1388808..1400121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPCU_RS06765 (HPCU_06920) nadC 1389271..1390092 (-) 822 WP_000404041.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPCU_RS06770 (HPCU_06925) nadA 1390092..1391102 (-) 1011 WP_001141778.1 quinolinate synthase NadA -
  HPCU_RS06775 (HPCU_06930) - 1391092..1391895 (-) 804 WP_000968154.1 phosphatidylserine decarboxylase -
  HPCU_RS06780 (HPCU_06935) - 1391892..1392395 (-) 504 WP_000953085.1 DUF6115 domain-containing protein -
  HPCU_RS06785 (HPCU_06940) - 1392408..1392902 (-) 495 WP_014534312.1 hypothetical protein -
  HPCU_RS06790 (HPCU_06945) mqnP 1392895..1393779 (-) 885 WP_000913874.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPCU_RS06795 (HPCU_06950) comEC/comE3 1393808..1395121 (-) 1314 WP_000653540.1 ComEC/Rec2 family competence protein Machinery gene
  HPCU_RS06800 (HPCU_06955) - 1395118..1396584 (-) 1467 WP_000349785.1 replicative DNA helicase -
  HPCU_RS06805 (HPCU_06960) - 1396595..1397989 (-) 1395 WP_000938196.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPCU_RS06810 (HPCU_06965) crdS 1397992..1399194 (-) 1203 WP_079992007.1 copper-sensing histidine kinase CrdS -
  HPCU_RS06815 (HPCU_06970) crdR 1399160..1399801 (-) 642 WP_001169807.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50150.18 Da        Isoelectric Point: 9.8515

>NTDB_id=46756 HPCU_RS06795 WP_000653540.1 1393808..1395121(-) (comEC/comE3) [Helicobacter pylori Cuz20]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESMKSCFFQTYSFSLTRKQDFKSHWRGFIDSAHSSTLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPVLNMPLTIPTIFVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSVGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=46756 HPCU_RS06795 WP_000653540.1 1393808..1395121(-) (comEC/comE3) [Helicobacter pylori Cuz20]
TTGAAGGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCAAAAGAATACTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATT
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTGGAGTCTATGAAATCATGCTTTTTCCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCGGCTTCATTGATAGCGCTCATTCAAGCACTTTAGTGGGTAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AACAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTTCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGATTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATCCCG
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGTGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945

Multiple sequence alignment