Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   I6J94_RS04075 Genome accession   NZ_CP069488
Coordinates   833291..833806 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain FDAARGOS_1264     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 828291..838806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J94_RS04030 (I6J94_04030) csrA 829147..829332 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  I6J94_RS04060 (I6J94_04060) yqaB 830521..831087 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  I6J94_RS04065 (I6J94_04065) yqaA 831084..831512 (+) 429 WP_001287462.1 YqaA family protein -
  I6J94_RS04070 (I6J94_04070) gshA 831585..833141 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  I6J94_RS04075 (I6J94_04075) luxS 833291..833806 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  I6J94_RS04080 (I6J94_04080) - 833857..834969 (-) 1113 WP_000638136.1 ATP-binding protein -
  I6J94_RS04085 (I6J94_04085) - 834966..835673 (-) 708 WP_001097132.1 RNA ligase family protein -
  I6J94_RS04090 (I6J94_04090) emrB 835931..837469 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  I6J94_RS04095 (I6J94_04095) emrA 837486..838658 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=467414 I6J94_RS04075 WP_001130208.1 833291..833806(+) (luxS) [Escherichia coli strain FDAARGOS_1264]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=467414 I6J94_RS04075 WP_001130208.1 833291..833806(+) (luxS) [Escherichia coli strain FDAARGOS_1264]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737