Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   H0242_RS26745 Genome accession   NZ_CP059148
Coordinates   5185416..5186765 (-) Length   449 a.a.
NCBI ID   WP_086407188.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5180416..5191765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0242_RS26710 (H0242_26430) - 5180454..5181149 (-) 696 WP_000466502.1 hypothetical protein -
  H0242_RS26715 (H0242_26435) - 5181136..5181924 (-) 789 WP_000120041.1 hypothetical protein -
  H0242_RS26720 (H0242_26440) - 5181956..5182525 (-) 570 WP_000767072.1 hypothetical protein -
  H0242_RS26725 (H0242_26445) - 5182643..5183116 (-) 474 WP_000023376.1 hypothetical protein -
  H0242_RS26730 (H0242_26450) hpf 5183523..5184065 (-) 543 WP_000671187.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  H0242_RS26735 (H0242_26455) cspC 5184389..5184586 (-) 198 WP_001990088.1 cold shock protein CspC -
  H0242_RS26740 (H0242_26460) - 5184713..5185416 (-) 704 Protein_5201 ComF family protein -
  H0242_RS26745 (H0242_26465) comFA 5185416..5186765 (-) 1350 WP_086407188.1 ATP-dependent helicase ComFA Machinery gene
  H0242_RS26750 (H0242_26470) - 5186892..5188310 (-) 1419 WP_140337928.1 NlpC/P60 family protein -
  H0242_RS26755 (H0242_26475) - 5188459..5188773 (-) 315 WP_000400857.1 winged helix-turn-helix transcriptional regulator -
  H0242_RS26760 (H0242_26480) - 5188946..5189788 (-) 843 WP_000684725.1 DegV family protein -
  H0242_RS26765 (H0242_26485) - 5190025..5190660 (+) 636 WP_086407187.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51003.84 Da        Isoelectric Point: 9.9095

>NTDB_id=467392 H0242_RS26745 WP_086407188.1 5185416..5186765(-) (comFA) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
MLAGKQLLLDELSSDLQRELNDLKKKGEVVCVQGVKKKASKYVCQRCGNIEQRLFASFLCKRCSKVCAYCRKCITMGRVS
ECAVLVRGIAERKREKNLNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADQMLQYAVKQAM
KERAARIYLTATPDETWKRKFRKGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLIHKRIPRVLLQWLQTYLNKKYPIFL
FVPHVRYVEEISLLLKSLNKRIEGVHAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=467392 H0242_RS26745 WP_086407188.1 5185416..5186765(-) (comFA) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
ATGCTAGCGGGGAAACAGTTGCTATTAGACGAACTTTCTTCAGATTTACAGAGGGAATTAAATGATTTGAAAAAGAAGGG
AGAGGTCGTGTGTGTACAAGGTGTAAAAAAGAAGGCTTCTAAATATGTATGTCAGCGCTGTGGAAATATAGAGCAGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCGCATATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTGTACTTGTTCGTGGGATTGCTGAAAGAAAGAGAGAAAAGAATTTAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGTCAGAATCTGGCGGCACAAGGTGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTTGAATTAGCACCGAGATTGCAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACCACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAGAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAAAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGCGGGAATTGGAAAAAAA
GCCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACATACTTAAATAAAAAATATCCTATTTTTTTA
TTCGTTCCCCATGTGCGATATGTAGAAGAAATAAGCCTGTTGTTAAAATCATTAAACAAGCGAATTGAAGGTGTACATGC
AGAAGATCCGGGGAGAAAAGAAAAAGTAGCAGCTTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTCGCGGTTTTAGGGGCGGAAGAAGAAATATTCTCAGAAAGTGCACTCGTA
CAAATTGCGGGCCGAGCCGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCATTTATTTTCACTATGGTAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCCAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(312-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.905

98.441

0.501
  comFA Latilactobacillus sakei subsp. sakei 23K

41.439

89.755

0.372