Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H0242_RS21985 Genome accession   NZ_CP059148
Coordinates   4301217..4301963 (-) Length   248 a.a.
NCBI ID   WP_000487013.1    Uniprot ID   A0A9W5QDK4
Organism   Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4296217..4306963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0242_RS21965 (H0242_21710) dnaG 4296978..4298774 (-) 1797 WP_000528221.1 DNA primase -
  H0242_RS21970 (H0242_21715) - 4298856..4298999 (-) 144 WP_000479748.1 hypothetical protein -
  H0242_RS21975 (H0242_21720) - 4299635..4300447 (-) 813 WP_000368949.1 pyruvate, water dikinase regulatory protein -
  H0242_RS21980 (H0242_21725) - 4300477..4301109 (-) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  H0242_RS21985 (H0242_21730) recO 4301217..4301963 (-) 747 WP_000487013.1 DNA repair protein RecO Machinery gene
  H0242_RS21990 (H0242_21735) - 4301997..4302140 (-) 144 WP_000883924.1 YqzL family protein -
  H0242_RS21995 (H0242_21740) era 4302317..4303222 (-) 906 WP_001080237.1 GTPase Era -
  H0242_RS22000 (H0242_21745) - 4303215..4303613 (-) 399 WP_001086281.1 cytidine deaminase -
  H0242_RS22005 (H0242_21750) - 4303713..4304066 (-) 354 WP_086407247.1 diacylglycerol kinase family protein -
  H0242_RS22010 (H0242_21755) ybeY 4304063..4304533 (-) 471 WP_000054686.1 rRNA maturation RNase YbeY -
  H0242_RS22015 (H0242_21760) - 4304530..4306674 (-) 2145 WP_000091517.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28609.20 Da        Isoelectric Point: 8.0488

>NTDB_id=467380 H0242_RS21985 WP_000487013.1 4301217..4301963(-) (recO) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGQFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=467380 H0242_RS21985 WP_000487013.1 4301217..4301963(-) (recO) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCAGTTTCTTATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTGTTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTCAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552