Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   H0242_RS21345 Genome accession   NZ_CP059148
Coordinates   4192584..4193378 (-) Length   264 a.a.
NCBI ID   WP_011110369.1    Uniprot ID   A0A9Q5QPF5
Organism   Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4187584..4198378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0242_RS21320 (H0242_21075) - 4188118..4190190 (-) 2073 WP_000810980.1 sigma-54 interaction domain-containing protein -
  H0242_RS21325 (H0242_21080) - 4190328..4190561 (+) 234 WP_001190212.1 DUF2627 domain-containing protein -
  H0242_RS21330 (H0242_21085) - 4190610..4191338 (-) 729 WP_000172594.1 glycerophosphodiester phosphodiesterase -
  H0242_RS21335 (H0242_21090) - 4191389..4191535 (+) 147 WP_001247671.1 YycC family protein -
  H0242_RS21340 (H0242_21095) - 4191767..4192330 (-) 564 WP_086407232.1 PRK06770 family protein -
  H0242_RS21345 (H0242_21100) spo0A 4192584..4193378 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  H0242_RS21350 (H0242_21105) spoIVB 4193670..4194968 (-) 1299 WP_003307836.1 SpoIVB peptidase -
  H0242_RS21355 (H0242_21110) recN 4195087..4196826 (-) 1740 WP_000947762.1 DNA repair protein RecN Machinery gene
  H0242_RS21360 (H0242_21115) argR 4197091..4197540 (-) 450 WP_001032580.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29415.18 Da        Isoelectric Point: 7.1175

>NTDB_id=467377 H0242_RS21345 WP_011110369.1 4192584..4193378(-) (spo0A) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=467377 H0242_RS21345 WP_011110369.1 4192584..4193378(-) (spo0A) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAAAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTCGGGCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACGCTATGATTAAACGTCCAC
TACCATCATTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAACGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACAACAGCAAGCCGTGTGGAGCGCGCAATTC
GTCACGCGATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818