Detailed information NTG0467375

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6J87_RS17960
• Genome accession: NZ_CP069480
• Coordinates: 3748798..3749790 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1257
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3743798..3754790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J87_RS17930 (I6J87_17930)	ispD	3743859..3744569 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6J87_RS17935 (I6J87_17935)	ispF	3744569..3745048 (+)	480	WP_001219252.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6J87_RS17940 (I6J87_17940)	truD	3745045..3746094 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
I6J87_RS17945 (I6J87_17945)	surE	3746075..3746836 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6J87_RS17950 (I6J87_17950)	pcm	3746830..3747456 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
I6J87_RS17955 (I6J87_17955)	nlpD	3747641..3748735 (+)	1095	WP_353055248.1	murein hydrolase activator NlpD	-
I6J87_RS17960 (I6J87_17960)	rpoS	3748798..3749790 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6J87_RS17965 (I6J87_17965)	-	3749968..3750519 (-)	552	WP_001179442.1	flavodoxin family protein	-
I6J87_RS17970 (I6J87_17970)	-	3750744..3751787 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
I6J87_RS17975 (I6J87_17975)	ygbN	3751930..3753294 (-)	1365	WP_000104433.1	GntP family transporter	-
I6J87_RS17980 (I6J87_17980)	ygbM	3753383..3754159 (-)	777	WP_001136928.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=467375 I6J87_RS17960 WP_000081550.1 3748798..3749790(+) (rpoS) [Escherichia coli strain FDAARGOS_1257]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=467375 I6J87_RS17960 WP_000081550.1 3748798..3749790(+) (rpoS) [Escherichia coli strain FDAARGOS_1257]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGTTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715