Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPV225_RS06520 Genome accession   NC_017355
Coordinates   1349273..1350586 (-) Length   437 a.a.
NCBI ID   WP_000653615.1    Uniprot ID   -
Organism   Helicobacter pylori v225d     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1344273..1355586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPV225_RS06490 (HPV225_1391) nadC 1344736..1345557 (-) 822 WP_000404068.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPV225_RS06495 (HPV225_1392) nadA 1345557..1346567 (-) 1011 WP_001141812.1 quinolinate synthase NadA -
  HPV225_RS06500 (HPV225_1393) - 1346557..1347360 (-) 804 WP_000968157.1 phosphatidylserine decarboxylase -
  HPV225_RS06505 (HPV225_1394) - 1347357..1347860 (-) 504 WP_000953075.1 DUF6115 domain-containing protein -
  HPV225_RS06510 (HPV225_1395) - 1347873..1348367 (-) 495 WP_001867294.1 hypothetical protein -
  HPV225_RS06515 (HPV225_1396) mqnP 1348360..1349244 (-) 885 WP_000913980.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPV225_RS06520 (HPV225_1397) comEC/comE3 1349273..1350586 (-) 1314 WP_000653615.1 ComEC/Rec2 family competence protein Machinery gene
  HPV225_RS06525 (HPV225_1398) - 1350583..1352049 (-) 1467 WP_000349783.1 replicative DNA helicase -
  HPV225_RS06530 (HPV225_1399) - 1352060..1353454 (-) 1395 WP_000954071.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPV225_RS06535 (HPV225_1400) crdS 1353457..1354659 (-) 1203 WP_079991774.1 copper-sensing histidine kinase CrdS -
  HPV225_RS06540 (HPV225_1401) crdR 1354625..1355266 (-) 642 WP_001169815.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50313.38 Da        Isoelectric Point: 9.9068

>NTDB_id=46737 HPV225_RS06520 WP_000653615.1 1349273..1350586(-) (comEC/comE3) [Helicobacter pylori v225d]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
AIIFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRILNMPLTIPTIFVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=46737 HPV225_RS06520 WP_000653615.1 1349273..1350586(-) (comEC/comE3) [Helicobacter pylori v225d]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACTATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAAATCATGCTTTTTCCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGTGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTTATAAGCTTAAGC
GCGATAATTTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTTTTCGCCTTTGTGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-383)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.881

100

0.959

Multiple sequence alignment