Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H0242_RS12310 Genome accession   NZ_CP059148
Coordinates   2400826..2401104 (+) Length   92 a.a.
NCBI ID   WP_000842214.1    Uniprot ID   A0A9W5VLT2
Organism   Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2395826..2406104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0242_RS12290 (H0242_12170) - 2397596..2398405 (+) 810 WP_000678377.1 papain-like cysteine protease family protein -
  H0242_RS12295 (H0242_12175) - 2398431..2399036 (+) 606 WP_000517275.1 hypothetical protein -
  H0242_RS12300 (H0242_12180) - 2399177..2399428 (-) 252 WP_000827562.1 response regulator transcription factor -
  H0242_RS12305 (H0242_12185) - 2399807..2400685 (+) 879 WP_061667592.1 helix-turn-helix domain-containing protein -
  H0242_RS12310 (H0242_12190) abrB 2400826..2401104 (+) 279 WP_000842214.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H0242_RS12315 (H0242_12195) - 2401720..2402970 (+) 1251 WP_001032356.1 hypothetical protein -
  H0242_RS12320 (H0242_12200) - 2403038..2403796 (+) 759 WP_000347982.1 TSUP family transporter -
  H0242_RS12325 (H0242_12205) - 2404039..2404698 (+) 660 WP_061667591.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10363.20 Da        Isoelectric Point: 9.6547

>NTDB_id=467369 H0242_RS12310 WP_000842214.1 2400826..2401104(+) (abrB) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPEGTE
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=467369 H0242_RS12310 WP_000842214.1 2400826..2401104(+) (abrB) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
ATGAAATCAAGAGGGATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGTGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAGAGGGGACGGAA
CTATTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

51.111

97.826

0.5