Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H0242_RS10010 Genome accession   NZ_CP059148
Coordinates   1952843..1953130 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1947843..1958130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0242_RS09990 (H0242_09900) - 1949020..1949217 (+) 198 WP_001048108.1 DUF4083 domain-containing protein -
  H0242_RS09995 (H0242_09905) - 1949249..1949710 (+) 462 WP_000024996.1 NUDIX hydrolase -
  H0242_RS10000 (H0242_09910) nadE 1949753..1950571 (-) 819 WP_000174897.1 ammonia-dependent NAD(+) synthetase -
  H0242_RS10005 (H0242_09915) - 1950847..1952727 (+) 1881 WP_001026003.1 ABC transporter permease -
  H0242_RS10010 (H0242_09920) abrB 1952843..1953130 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H0242_RS10015 (H0242_09925) - 1953406..1954353 (+) 948 WP_000099758.1 serine protease -
  H0242_RS10020 (H0242_09930) - 1954393..1954701 (-) 309 WP_061667464.1 ArsR/SmtB family transcription factor -
  H0242_RS10025 (H0242_09935) - 1954808..1955743 (+) 936 WP_000877947.1 aldo/keto reductase -
  H0242_RS10030 (H0242_09940) - 1955791..1956966 (+) 1176 WP_001082502.1 MFS transporter -
  H0242_RS10035 (H0242_09945) - 1957287..1957511 (-) 225 WP_000162602.1 hypothetical protein -
  H0242_RS10040 (H0242_09950) - 1957596..1957943 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=467367 H0242_RS10010 WP_000648324.1 1952843..1953130(+) (abrB) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=467367 H0242_RS10010 WP_000648324.1 1952843..1953130(+) (abrB) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCGAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526