Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   H0242_RS07875 Genome accession   NZ_CP059148
Coordinates   1493768..1494370 (-) Length   200 a.a.
NCBI ID   WP_086405881.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1488768..1499370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0242_RS07855 (H0242_07790) dnaD 1489080..1489787 (+) 708 WP_000728542.1 DNA replication protein DnaD -
  H0242_RS07860 (H0242_07795) nth 1489803..1490450 (+) 648 WP_000933035.1 endonuclease III -
  H0242_RS07865 (H0242_07800) - 1490454..1490972 (+) 519 WP_000442660.1 YpoC family protein -
  H0242_RS07870 (H0242_07805) - 1490999..1493701 (-) 2703 WP_001283104.1 PBP1A family penicillin-binding protein -
  H0242_RS07875 (H0242_07810) recU 1493768..1494370 (-) 603 WP_086405881.1 Holliday junction resolvase RecU Machinery gene
  H0242_RS07880 (H0242_07815) - 1494474..1495499 (+) 1026 WP_086405882.1 DUF2515 domain-containing protein -
  H0242_RS07885 (H0242_07820) - 1495916..1496158 (+) 243 WP_001252036.1 hypothetical protein -
  H0242_RS07890 (H0242_07825) - 1496174..1496518 (+) 345 WP_000786936.1 YppE family protein -
  H0242_RS07895 (H0242_07830) - 1496545..1496736 (-) 192 WP_000242652.1 YppF family protein -
  H0242_RS07900 (H0242_07835) - 1496914..1497606 (+) 693 WP_086405883.1 YppG family protein -
  H0242_RS07905 (H0242_07840) - 1497762..1498184 (+) 423 WP_000546292.1 CotD family spore coat protein -
  H0242_RS07910 (H0242_07845) - 1498241..1498795 (+) 555 WP_086405884.1 DUF1273 domain-containing protein -
  H0242_RS07915 (H0242_07850) gpsB 1498893..1499228 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23365.56 Da        Isoelectric Point: 9.4338

>NTDB_id=467366 H0242_RS07875 WP_086405881.1 1493768..1494370(-) (recU) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTHLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=467366 H0242_RS07875 WP_086405881.1 1493768..1494370(-) (recU) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGCAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACATCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATAGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTCATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63