Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H0242_RS00225 Genome accession   NZ_CP059148
Coordinates   42022..42306 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 37022..47306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0242_RS00190 (H0242_00190) tmk 37214..37840 (+) 627 WP_000677227.1 dTMP kinase -
  H0242_RS00195 (H0242_00195) holB 37876..38859 (+) 984 WP_000978586.1 DNA polymerase III subunit delta' -
  H0242_RS00200 (H0242_00200) - 38865..39692 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  H0242_RS00205 (H0242_00205) yabA 39707..40057 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  H0242_RS00210 (H0242_00210) - 40140..40880 (+) 741 WP_001055354.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  H0242_RS00215 (H0242_00215) - 40867..41157 (+) 291 WP_086406416.1 GIY-YIG nuclease family protein -
  H0242_RS00220 (H0242_00220) rsmI 41126..42001 (+) 876 WP_000267816.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  H0242_RS00225 (H0242_00225) abrB 42022..42306 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H0242_RS00230 (H0242_00230) metG 42793..44775 (+) 1983 WP_240528956.1 methionine--tRNA ligase -
  H0242_RS00235 (H0242_00235) - 44942..45709 (+) 768 WP_061666990.1 TatD family hydrolase -
  H0242_RS00240 (H0242_00240) rnmV 45924..46481 (+) 558 WP_000692837.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=467348 H0242_RS00225 WP_000843036.1 42022..42306(-) (abrB) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=467348 H0242_RS00225 WP_000843036.1 42022..42306(-) (abrB) [Bacillus thuringiensis serovar sumiyoshiensis strain 4AO1]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851