Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   H0I83_RS25895 Genome accession   NZ_CP059141
Coordinates   5042093..5043862 (-) Length   589 a.a.
NCBI ID   WP_086407208.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar fukuokaensis strain 4AP1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5037093..5048862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0I83_RS25870 - 5037510..5037802 (-) 293 Protein_5026 YitT family protein -
  H0I83_RS25875 (H0I83_25625) - 5037779..5038342 (-) 564 Protein_5027 YitT family protein -
  H0I83_RS25880 (H0I83_25630) - 5038465..5039076 (-) 612 WP_033667507.1 GTP pyrophosphokinase family protein -
  H0I83_RS25885 (H0I83_25635) - 5039116..5039736 (-) 621 WP_086407210.1 TetR/AcrR family transcriptional regulator -
  H0I83_RS25890 (H0I83_25640) rcrQ 5040250..5042106 (-) 1857 WP_086407209.1 ABC transporter ATP-binding protein Regulator
  H0I83_RS25895 (H0I83_25645) rcrP 5042093..5043862 (-) 1770 WP_086407208.1 ABC transporter ATP-binding protein Regulator
  H0I83_RS25900 (H0I83_25650) - 5043995..5044405 (-) 411 WP_086407207.1 MarR family winged helix-turn-helix transcriptional regulator -
  H0I83_RS25910 (H0I83_25660) smpB 5045308..5045775 (-) 468 WP_001123917.1 SsrA-binding protein -
  H0I83_RS25915 (H0I83_25665) rnr 5045902..5048334 (-) 2433 WP_086407206.1 ribonuclease R -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65431.08 Da        Isoelectric Point: 6.8752

>NTDB_id=467338 H0I83_RS25895 WP_086407208.1 5042093..5043862(-) (rcrP) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
MLKIFKYLKRNEWILVLFSIAFITVQVWLDLKLPDYMAEITTLIQMEGTNFSQIIEPGAYMLLCAVGSMVTAVIVGYFAA
KVAAGLSKRLRGLVFDKTLSFSLEEINRFSIASLITRSTNDVTQIQFIVAMGLQIIVKAPILAVWAIMKISGKSWQLTTA
TGIAVVVLCMMLAVIILFAIPKFKIIQTLTDNLNRVTRENLTGMRVVRAYNAKDYEENKFEKANMELTKTNLFANRLMAI
IGPGMTAIMSGLSVAIYWIGAYLINEAQMVNRITIFSDIVVFSSYAMQVVMAFMMVSMIFIMLPRATVSAKRIMEVLETE
AKITDGTVTEGKPGIVGEIEFRNVSFKYPDSENHILRNISFTAKKGETVAFIGSTGSGKTSLVNLIPRFNDVSEGEVLVD
GINVKNYRQETLHDKIGYVSQSSVLFSGTVTSNVSYGESGHMDSSLNAVKEALEIAQGKEFVEKLEGQYEAQISQGGTNV
SGGQKQRISIARAIYRKPEIYIFDDSFSALDYKTDRVLRSALRKETKDATTLIVAQRIGTIKDADRIIVLEEGEVVGNGT
HEQLMDSCETYQEIAYSQLSKEELTDGQK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=467338 H0I83_RS25895 WP_086407208.1 5042093..5043862(-) (rcrP) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
ATGTTGAAAATATTTAAATATTTGAAAAGGAATGAATGGATACTTGTTCTATTTAGTATAGCATTCATTACGGTACAGGT
TTGGCTGGACTTAAAGCTACCGGACTATATGGCTGAAATCACGACATTAATCCAAATGGAAGGTACGAACTTTTCTCAAA
TTATTGAACCTGGAGCATATATGCTACTCTGTGCAGTAGGAAGTATGGTTACTGCTGTTATCGTAGGATACTTTGCTGCT
AAGGTTGCAGCGGGATTATCAAAACGTCTACGCGGATTAGTTTTTGATAAAACTTTATCTTTTTCGTTGGAAGAAATTAA
TCGTTTTTCGATAGCAAGTTTGATTACTCGTTCAACTAATGATGTTACGCAAATTCAATTTATTGTGGCAATGGGATTAC
AGATAATTGTAAAAGCGCCAATTCTAGCTGTTTGGGCAATCATGAAAATTTCAGGGAAAAGCTGGCAATTGACAACAGCG
ACGGGTATAGCAGTTGTCGTTTTATGCATGATGTTAGCTGTGATTATTCTATTTGCAATACCAAAGTTCAAAATCATTCA
AACTCTTACTGATAATTTAAACCGTGTAACTCGTGAGAACTTGACAGGGATGCGCGTTGTACGTGCTTATAACGCTAAGG
ACTATGAAGAAAATAAATTTGAAAAAGCTAATATGGAATTAACAAAAACAAATCTTTTTGCAAATCGTTTAATGGCAATT
ATTGGACCAGGGATGACTGCAATTATGTCCGGTTTAAGTGTTGCGATTTATTGGATTGGTGCTTATTTGATTAACGAAGC
ACAGATGGTAAATCGAATTACAATTTTCTCGGATATAGTTGTTTTCTCATCGTATGCCATGCAAGTTGTAATGGCATTTA
TGATGGTAAGTATGATTTTTATTATGTTACCTCGTGCTACGGTATCAGCAAAACGTATTATGGAAGTACTTGAAACAGAA
GCGAAAATTACAGATGGTACAGTTACAGAAGGAAAACCAGGTATTGTAGGAGAGATTGAGTTCCGCAATGTTAGCTTTAA
ATATCCAGATTCAGAGAACCATATTCTTCGTAATATTAGCTTTACTGCAAAAAAAGGAGAAACGGTAGCTTTTATTGGAT
CCACGGGGAGTGGAAAAACAAGTTTGGTAAATCTAATTCCTCGTTTCAATGATGTTTCTGAAGGGGAAGTATTGGTTGAT
GGCATAAATGTAAAAAATTATAGACAAGAAACTCTACACGATAAAATTGGTTACGTTTCACAATCGTCTGTGTTATTCAG
TGGTACTGTAACTTCGAACGTATCCTATGGAGAATCTGGACATATGGATTCGTCACTAAATGCTGTCAAAGAAGCATTGG
AAATTGCACAAGGGAAAGAATTCGTGGAAAAACTTGAAGGACAATATGAAGCGCAGATATCACAAGGTGGTACAAACGTA
TCTGGGGGACAAAAACAGCGTATATCGATTGCACGTGCAATTTATCGGAAACCAGAAATTTATATATTCGATGACTCGTT
TTCAGCATTAGACTACAAAACAGACAGGGTTCTACGTTCTGCTTTAAGAAAAGAAACGAAGGATGCCACTACCTTAATTG
TTGCACAGCGTATCGGAACAATTAAAGACGCAGACCGCATTATTGTGCTTGAAGAGGGAGAAGTAGTTGGGAATGGAACA
CATGAACAATTAATGGATAGCTGCGAGACGTATCAAGAGATTGCATATTCTCAGCTTTCGAAGGAGGAATTGACTGATGG
CCAAAAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

53.5

100

0.545