Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H0I83_RS25890 Genome accession   NZ_CP059141
Coordinates   5040250..5042106 (-) Length   618 a.a.
NCBI ID   WP_086407209.1    Uniprot ID   A0A9X8M1R6
Organism   Bacillus thuringiensis serovar fukuokaensis strain 4AP1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5035250..5047106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0I83_RS25865 (H0I83_25620) - 5036028..5037233 (-) 1206 WP_086407211.1 macrolide family glycosyltransferase -
  H0I83_RS25870 - 5037510..5037802 (-) 293 Protein_5026 YitT family protein -
  H0I83_RS25875 (H0I83_25625) - 5037779..5038342 (-) 564 Protein_5027 YitT family protein -
  H0I83_RS25880 (H0I83_25630) - 5038465..5039076 (-) 612 WP_033667507.1 GTP pyrophosphokinase family protein -
  H0I83_RS25885 (H0I83_25635) - 5039116..5039736 (-) 621 WP_086407210.1 TetR/AcrR family transcriptional regulator -
  H0I83_RS25890 (H0I83_25640) rcrQ 5040250..5042106 (-) 1857 WP_086407209.1 ABC transporter ATP-binding protein Regulator
  H0I83_RS25895 (H0I83_25645) rcrP 5042093..5043862 (-) 1770 WP_086407208.1 ABC transporter ATP-binding protein Regulator
  H0I83_RS25900 (H0I83_25650) - 5043995..5044405 (-) 411 WP_086407207.1 MarR family winged helix-turn-helix transcriptional regulator -
  H0I83_RS25910 (H0I83_25660) smpB 5045308..5045775 (-) 468 WP_001123917.1 SsrA-binding protein -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68595.46 Da        Isoelectric Point: 6.7265

>NTDB_id=467337 H0I83_RS25890 WP_086407209.1 5040250..5042106(-) (rcrQ) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
MAKNDYTIGDHEKNSKNGRQMGGGLSPMGGRAQGQKVNNFKKTIQQLISYCKSYVPIVIFALILAFVGSAFNVYGPDKLS
EMTDLIQEGIRGDIDLGAIKNIGIILVVLYGLGLVFNYIQGFIMATVTQKITKKMRTELSQKMNRIPLSYFDKMSYGNIL
SRVTNDVDTIGQTLNNSLGQLVTAIATFVGALIMMFYTNWIMAITGIVATLIGFILMTLIMKRSQKYFVQQQAELGKING
HIEEMYAGHHIVKAYNGEKEAKEVFHTINDRLFDNAWKSQFMSGIMMPIMQFIGNFGYVAVCIVGALLVTNGVITIGTIV
AFMVYIRLFTQPLSQLAQAATNLQSTAAASERVFEFLEEEELSNESEKTLRLDNVKGDVEFKHVKFGYDKDRLIIKDFSA
KVNAGQKVAIVGPTGAGKTTLVNLLMRFYELNSGEITIDGVPINQLTREHVHDLFCMVLQDTWLFEGTIRENIVYSKENV
SDEEIIATCKAVGLHNTIKNLSNGYDTLLNDKANLSAGQKQLITIARAMIENAPLLILDEATSSVDTRTELLIQKAMDRL
TVGKTSFVIAHRLSTIKNADLILVMKEGDILETGNHEELLAKGGFYADLYNSQFESVS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=467337 H0I83_RS25890 WP_086407209.1 5040250..5042106(-) (rcrQ) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
ATGGCCAAAAATGATTATACCATTGGAGATCATGAAAAAAACTCAAAAAATGGGAGACAGATGGGCGGAGGGCTTAGTCC
AATGGGTGGCAGGGCCCAAGGGCAAAAAGTAAACAATTTTAAAAAAACGATTCAACAGCTGATTTCCTACTGTAAGTCTT
ATGTACCCATTGTTATTTTTGCCTTAATATTAGCTTTTGTGGGTTCTGCATTTAATGTATATGGCCCAGATAAATTAAGT
GAAATGACAGACCTTATCCAAGAAGGGATTAGGGGTGACATTGATTTAGGTGCAATCAAAAATATTGGAATCATTTTAGT
GGTTCTCTACGGATTAGGCTTGGTATTTAATTATATACAAGGTTTTATAATGGCAACGGTAACACAAAAAATCACAAAAA
AAATGCGTACAGAATTATCGCAAAAAATGAATCGAATCCCTTTAAGTTACTTTGATAAAATGAGTTATGGAAATATATTA
AGCCGTGTAACAAATGATGTTGATACAATTGGCCAAACGCTAAATAATAGCCTAGGACAATTAGTAACGGCAATCGCAAC
TTTTGTTGGTGCATTAATAATGATGTTCTATACAAACTGGATTATGGCTATAACAGGAATTGTTGCAACCTTAATTGGAT
TTATTTTAATGACATTGATTATGAAGCGTTCTCAAAAATACTTTGTACAACAGCAGGCTGAACTAGGGAAAATCAATGGA
CATATTGAAGAAATGTATGCAGGTCACCATATCGTAAAAGCATATAACGGCGAAAAGGAAGCAAAAGAAGTGTTCCATAC
AATCAATGATCGTCTTTTTGATAATGCTTGGAAATCACAGTTTATGTCTGGGATTATGATGCCTATCATGCAGTTTATCG
GGAACTTTGGGTATGTAGCAGTTTGTATTGTTGGTGCATTACTTGTGACAAATGGTGTAATTACAATTGGAACAATCGTT
GCCTTTATGGTCTATATTCGTTTGTTCACACAGCCATTATCACAATTAGCACAAGCTGCAACGAATCTGCAATCTACAGC
AGCAGCAAGTGAACGTGTATTTGAATTTTTAGAAGAAGAAGAATTATCAAATGAAAGTGAAAAAACACTGAGATTAGATA
ATGTCAAAGGAGATGTGGAATTTAAGCATGTTAAATTTGGCTATGATAAAGATCGTCTTATCATTAAAGACTTCTCTGCT
AAAGTGAATGCAGGACAAAAAGTAGCTATTGTAGGTCCAACGGGTGCTGGAAAAACGACATTAGTAAATTTATTAATGCG
ATTTTATGAACTGAACAGTGGAGAAATTACTATTGATGGTGTTCCTATAAATCAATTAACTCGTGAACATGTGCATGATC
TATTCTGTATGGTACTTCAGGATACATGGCTATTCGAGGGGACGATTCGCGAAAATATTGTCTATTCAAAGGAAAATGTT
TCAGATGAAGAAATTATAGCAACATGTAAAGCAGTTGGGCTGCATAATACGATTAAAAACTTATCTAACGGTTATGATAC
CTTATTAAATGATAAAGCGAATTTATCAGCTGGACAAAAACAATTAATTACGATTGCCCGTGCGATGATTGAAAATGCCC
CATTATTAATTCTAGATGAGGCTACGAGCTCAGTTGATACACGTACGGAATTATTAATTCAAAAAGCAATGGATCGTTTA
ACAGTTGGGAAAACATCCTTTGTCATTGCACACCGTCTTTCGACGATAAAAAATGCTGACTTGATCTTAGTGATGAAAGA
GGGAGACATTTTAGAAACAGGAAACCATGAGGAGTTACTAGCAAAAGGTGGATTCTATGCGGATCTGTATAATAGTCAAT
TTGAATCAGTCTCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(58-333)

ABC transporter (ABC_tran)

(396-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.326

93.366

0.526