Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   H0I83_RS21575 Genome accession   NZ_CP059141
Coordinates   4241125..4241871 (-) Length   248 a.a.
NCBI ID   WP_000487013.1    Uniprot ID   A0A9W5QDK4
Organism   Bacillus thuringiensis serovar fukuokaensis strain 4AP1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4236125..4246871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0I83_RS21555 (H0I83_21330) dnaG 4236886..4238682 (-) 1797 WP_000528221.1 DNA primase -
  H0I83_RS21560 (H0I83_21335) - 4238764..4238907 (-) 144 WP_000479748.1 hypothetical protein -
  H0I83_RS21565 (H0I83_21340) - 4239543..4240355 (-) 813 WP_000368949.1 pyruvate, water dikinase regulatory protein -
  H0I83_RS21570 (H0I83_21345) - 4240385..4241017 (-) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  H0I83_RS21575 (H0I83_21350) recO 4241125..4241871 (-) 747 WP_000487013.1 DNA repair protein RecO Machinery gene
  H0I83_RS21580 (H0I83_21355) - 4241905..4242048 (-) 144 WP_000883924.1 YqzL family protein -
  H0I83_RS21585 (H0I83_21360) era 4242225..4243130 (-) 906 WP_001080237.1 GTPase Era -
  H0I83_RS21590 (H0I83_21365) - 4243123..4243521 (-) 399 WP_001086281.1 cytidine deaminase -
  H0I83_RS21595 (H0I83_21370) - 4243621..4243974 (-) 354 WP_000715475.1 diacylglycerol kinase family protein -
  H0I83_RS21600 (H0I83_21375) ybeY 4243971..4244441 (-) 471 WP_000054686.1 rRNA maturation RNase YbeY -
  H0I83_RS21605 (H0I83_21380) - 4244438..4246582 (-) 2145 WP_000091517.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28609.20 Da        Isoelectric Point: 8.0488

>NTDB_id=467328 H0I83_RS21575 WP_000487013.1 4241125..4241871(-) (recO) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGQFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=467328 H0I83_RS21575 WP_000487013.1 4241125..4241871(-) (recO) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCAGTTTCTTATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTGTTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTCAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552