Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   H0I83_RS20955 Genome accession   NZ_CP059141
Coordinates   4137904..4139643 (-) Length   579 a.a.
NCBI ID   WP_000947762.1    Uniprot ID   A0A9X6YQQ5
Organism   Bacillus thuringiensis serovar fukuokaensis strain 4AP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4132904..4144643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0I83_RS20925 (H0I83_20705) - 4133145..4133378 (+) 234 WP_001190212.1 DUF2627 domain-containing protein -
  H0I83_RS20930 (H0I83_20710) - 4133427..4134155 (-) 729 WP_000172594.1 glycerophosphodiester phosphodiesterase -
  H0I83_RS20935 (H0I83_20715) - 4134206..4134352 (+) 147 WP_001247671.1 YycC family protein -
  H0I83_RS20940 (H0I83_20720) - 4134584..4135147 (-) 564 WP_086407232.1 PRK06770 family protein -
  H0I83_RS20945 (H0I83_20725) spo0A 4135401..4136195 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  H0I83_RS20950 (H0I83_20730) spoIVB 4136487..4137785 (-) 1299 WP_003307836.1 SpoIVB peptidase -
  H0I83_RS20955 (H0I83_20735) recN 4137904..4139643 (-) 1740 WP_000947762.1 DNA repair protein RecN Machinery gene
  H0I83_RS20960 (H0I83_20740) argR 4139908..4140357 (-) 450 WP_001032580.1 arginine repressor ArgR -
  H0I83_RS20965 (H0I83_20745) - 4140500..4141339 (-) 840 WP_086407233.1 TlyA family RNA methyltransferase -
  H0I83_RS20970 (H0I83_20750) dxs 4141343..4143235 (-) 1893 WP_000366456.1 1-deoxy-D-xylulose-5-phosphate synthase -
  H0I83_RS20975 (H0I83_20755) ispA 4143537..4144427 (-) 891 WP_061666302.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65847.99 Da        Isoelectric Point: 4.8284

>NTDB_id=467327 H0I83_RS20955 WP_000947762.1 4137904..4139643(-) (recN) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGKGLDNVRSAMGQMESITHLDEVYQENYDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=467327 H0I83_RS20955 WP_000947762.1 4137904..4139643(-) (recN) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCAATTAGTTTACTTGTAGGTGGCCGTGGGTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGCTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGGAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAAACACTTGTTGATATTCATGGACAGCACG
AAACGCAAGATTTAATGAATGAAGAACGACATCTTTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GATATATATCAAAACGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGCCTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAGGCGGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCC
GACGGAAAAGGATTAGATAATGTAAGAAGTGCAATGGGGCAAATGGAAAGTATTACACATTTAGATGAAGTGTATCAAGA
GAATTATGATTCAATTGCAAATAGCTACTACTTATTAGAAGAGGTTGCCTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAGATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCAGATAAAATTGAACAGGAAATTTTTACAATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACATCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGCAGAAGAACCCCTTGTGGAAGGTGCACCGGTAAGACTTACGGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGAGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGTACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTAGAAATCACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601