Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   I6J87_RS05975 Genome accession   NZ_CP069480
Coordinates   1220025..1220501 (-) Length   158 a.a.
NCBI ID   WP_001186199.1    Uniprot ID   Q83W77
Organism   Escherichia coli strain FDAARGOS_1257     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1215025..1225501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J87_RS05940 (I6J87_05940) - 1215692..1217011 (+) 1320 WP_000144686.1 site-specific integrase -
  I6J87_RS05945 (I6J87_05945) - 1217104..1217958 (-) 855 WP_024174313.1 DUF4942 domain-containing protein -
  I6J87_RS05950 (I6J87_05950) - 1218043..1218240 (-) 198 WP_000839247.1 DUF957 domain-containing protein -
  I6J87_RS05955 (I6J87_05955) - 1218252..1218740 (-) 489 WP_000761726.1 DUF5983 family protein -
  I6J87_RS05960 (I6J87_05960) - 1218737..1219114 (-) 378 WP_000854700.1 TA system toxin CbtA family protein -
  I6J87_RS05965 (I6J87_05965) cbeA 1219204..1219572 (-) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  I6J87_RS05970 (I6J87_05970) - 1219735..1219956 (-) 222 WP_000692353.1 DUF987 domain-containing protein -
  I6J87_RS05975 (I6J87_05975) radC 1220025..1220501 (-) 477 WP_001186199.1 RadC family protein Machinery gene
  I6J87_RS05980 (I6J87_05980) - 1220517..1221002 (-) 486 WP_000213723.1 antirestriction protein -
  I6J87_RS05985 (I6J87_05985) - 1221094..1221912 (-) 819 WP_001234709.1 DUF932 domain-containing protein -
  I6J87_RS05990 (I6J87_05990) agn43 1222239..1225361 (-) 3123 WP_204097931.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17734.36 Da        Isoelectric Point: 7.6152

>NTDB_id=467323 I6J87_RS05975 WP_001186199.1 1220025..1220501(-) (radC) [Escherichia coli strain FDAARGOS_1257]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=467323 I6J87_RS05975 WP_001186199.1 1220025..1220501(-) (radC) [Escherichia coli strain FDAARGOS_1257]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q83W77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399