Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   H0I83_RS06060 Genome accession   NZ_CP059141
Coordinates   1176038..1177864 (+) Length   608 a.a.
NCBI ID   WP_000003355.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar fukuokaensis strain 4AP1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1171038..1182864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0I83_RS06040 (H0I83_05975) - 1171341..1172015 (-) 675 WP_000362600.1 TerC family protein -
  H0I83_RS06045 (H0I83_05980) mecA 1172361..1173044 (+) 684 WP_000350716.1 adaptor protein MecA Regulator
  H0I83_RS06050 (H0I83_05985) - 1173117..1174661 (+) 1545 WP_086405981.1 cardiolipin synthase -
  H0I83_RS06055 (H0I83_05990) - 1174742..1175986 (+) 1245 WP_000628325.1 competence protein CoiA -
  H0I83_RS06060 (H0I83_05995) pepF 1176038..1177864 (+) 1827 WP_000003355.1 oligoendopeptidase F Regulator
  H0I83_RS06065 (H0I83_06000) - 1177997..1178170 (-) 174 WP_000750354.1 hypothetical protein -
  H0I83_RS06070 (H0I83_06005) - 1178400..1179293 (-) 894 WP_000360649.1 ClpXP adapter SpxH family protein -
  H0I83_RS06075 (H0I83_06010) - 1179293..1179691 (-) 399 WP_000043386.1 hypothetical protein -
  H0I83_RS06080 (H0I83_06015) - 1179860..1180438 (-) 579 WP_000191113.1 CYTH domain-containing protein -
  H0I83_RS06085 (H0I83_06020) - 1180583..1180954 (+) 372 WP_001180015.1 hypothetical protein -
  H0I83_RS06090 (H0I83_06025) - 1180985..1181623 (+) 639 WP_001081480.1 GTP pyrophosphokinase family protein -
  H0I83_RS06095 (H0I83_06030) - 1181642..1182439 (+) 798 WP_000673196.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70188.50 Da        Isoelectric Point: 4.5990

>NTDB_id=467313 H0I83_RS06060 WP_000003355.1 1176038..1177864(+) (pepF) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
MSEQNKAKTLPDRNEIEEASTWRLEDIFQTDAEWEKEFQAIKELLPKLIEFKGKLGDSADNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSVSEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSSSSNTFGMLNNADLKFPSIKGEDGEEIEITHGRYIQFLESDDGRVREDAFKAVYETYGKFKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVETVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDLLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=467313 H0I83_RS06060 WP_000003355.1 1176038..1177864(+) (pepF) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
ATGTCTGAACAAAACAAAGCGAAAACATTACCAGATCGCAATGAGATTGAAGAAGCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAATTGAATTTAAAGGGA
AACTTGGTGACTCTGCGGACAATTTACTTGAGGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCTCATATGCGTTACGATCAAGATACAACAAACTCTGTATATCAAGCATTAAATGATCGCGCAACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCGTATATTGTACCTGAAATTTTGTCGGTTTCAGAAGATACACTGCAAACATTCTTGA
AGGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACACGTCAACGCCCGCACGTATTATCAGAAGCT
GAGGAGGCTTTATTAGCGGAAGCATCTGAAGTAATGAGTTCATCAAGCAATACATTTGGTATGTTGAATAACGCGGATTT
AAAATTCCCATCTATTAAAGGTGAAGACGGAGAAGAAATAGAAATTACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATGGCCGTGTTCGCGAAGATGCATTTAAAGCTGTATATGAAACGTACGGGAAATTTAAAAATACATTCGCAAGTACG
TTAAGCGGAGCAGTAAAACGTAATAATTTCAATGCGCGTGTTCGTAAATATGATTCTGCTCGCCAAGCTGCACTAAGCAA
TAATAATATTCCGGAAGCAGTATACGATCAACTTGTTGAAACGGTAAATGACAACTTACATTTATTACACCGTTACATCG
ATATTCGTAAGCGGGCATTAGGACTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAATACGAAGAAGCGCAAGACCTTTTATTAAAATCTTTAAACGTACTTGGTGATGAATATGTTGATATTTTGAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGGGCATATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCG
GTGCATAGTTACTATACAAGAAAAACACAACCGCACGTATATGGTGATTATTCCATCTTCGTAGCAGAAGTGGCATCAAC
TTGTAATGAAGCGCTTCTAAATGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTTGCAGAGTTTGAACATATTATTCATAAGAAAGTACAA
GAAGGACATGCTGTTACGCCAGACATGCTAACGGAAATCTACTACGATTTAAATAAGAAATATTTCGGTGACGCTTTAGT
AATCGACGAAGAGATTGGTTTAGAATGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCGACAGCTCTATCTAAACAGATTTTAGAAGAAGGACAACCAGCAGTAGAACGTTATATTAACGAGTTC
TTAAAAGCAGGAAGCTCTGATTATCCAATTGAAGTGCTGAAAAAAGCAGGAGTAGATATGGCATCTCCTGAACCAGTAAA
AGAGGCACTACAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.916

97.533

0.487