Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   H0I83_RS00020 Genome accession   NZ_CP059141
Coordinates   3118..4245 (+) Length   375 a.a.
NCBI ID   WP_061667494.1    Uniprot ID   A0A9X6YQP9
Organism   Bacillus thuringiensis serovar fukuokaensis strain 4AP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0I83_RS00005 (H0I83_00005) dnaA 101..1441 (+) 1341 WP_000428018.1 chromosomal replication initiator protein DnaA -
  H0I83_RS00010 (H0I83_00010) dnaN 1620..2765 (+) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  H0I83_RS00015 (H0I83_00015) yaaA 2893..3105 (+) 213 WP_000821361.1 S4 domain-containing protein YaaA -
  H0I83_RS00020 (H0I83_00020) recF 3118..4245 (+) 1128 WP_061667494.1 DNA replication/repair protein RecF Machinery gene
  H0I83_RS00025 (H0I83_00025) gyrB 4285..6207 (+) 1923 WP_000435979.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  H0I83_RS00030 (H0I83_00030) gyrA 6296..8767 (+) 2472 WP_061667492.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43280.65 Da        Isoelectric Point: 7.1879

>NTDB_id=467296 H0I83_RS00020 WP_061667494.1 3118..4245(+) (recF) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
MFISKIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLQLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=467296 H0I83_RS00020 WP_061667494.1 3118..4245(+) (recF) [Bacillus thuringiensis serovar fukuokaensis strain 4AP1]
TTGTTTATTTCAAAAATACAATTAAAAAACTATCGAAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAACGCACAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGCAAAAAGGCAAAACTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCAGTTGCTACAGGAATGGGCAGCTCCAATTCATCGGGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTAATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGCTGGATGATGTTTTATCA
GAATTAGACGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAGGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGATGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653