Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   H0G71_RS09010 Genome accession   NZ_CP059140
Coordinates   1809587..1811383 (+) Length   598 a.a.
NCBI ID   WP_180808273.1    Uniprot ID   -
Organism   Lactobacillus crispatus strain B4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1804587..1816383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0G71_RS08985 (H0G71_08985) - 1805498..1805878 (-) 381 WP_005725472.1 hypothetical protein -
  H0G71_RS08990 (H0G71_08990) - 1806023..1806574 (+) 552 WP_005722451.1 GNAT family N-acetyltransferase -
  H0G71_RS08995 (H0G71_08995) - 1806889..1807431 (+) 543 WP_237457662.1 PBECR4 domain-containing protein -
  H0G71_RS09000 (H0G71_09000) - 1807428..1808117 (-) 690 WP_180808271.1 DUF554 domain-containing protein -
  H0G71_RS09005 (H0G71_09005) - 1808182..1809420 (-) 1239 WP_180808272.1 LCP family protein -
  H0G71_RS09010 (H0G71_09010) pepF 1809587..1811383 (+) 1797 WP_180808273.1 oligoendopeptidase F Regulator
  H0G71_RS09015 (H0G71_09015) - 1811535..1811750 (+) 216 WP_180808274.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  H0G71_RS09020 (H0G71_09020) - 1811754..1812161 (+) 408 WP_089143643.1 type II toxin-antitoxin system death-on-curing family toxin -
  H0G71_RS09025 (H0G71_09025) - 1812225..1812464 (-) 240 WP_258012965.1 bacteriocin immunity protein -
  H0G71_RS09030 (H0G71_09030) - 1812569..1812766 (-) 198 WP_035443234.1 helix-turn-helix transcriptional regulator -
  H0G71_RS09035 (H0G71_09035) - 1812763..1813248 (-) 486 WP_180808670.1 hypothetical protein -
  H0G71_RS09040 (H0G71_09040) - 1813939..1815057 (+) 1119 WP_065990700.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  H0G71_RS09045 (H0G71_09045) - 1815116..1815592 (+) 477 WP_005718152.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67918.82 Da        Isoelectric Point: 4.7281

>NTDB_id=467295 H0G71_RS09010 WP_180808273.1 1809587..1811383(+) (pepF) [Lactobacillus crispatus strain B4]
MAIPNRNEVPEELKWDLTRIFKNDEEWEQAYAAAQEKVDQLGELKGTLAKSGKDLYEGLTKILAVKREVENIYVYATMSS
DVDTANSHYLGYVSRVQSLANQFEAATSFINPEILSIPSDKLAEFKQAEPRLKNYAHYLEMITNKRPHTLPAEQEKLIAD
AGDALGVSENTFNVLTNSDMEYGYVQDDDGNMEQLSDGLYSLLIQSQNRDVRKGAFDTLYATYGQFQNSLASTLSGVVKK
HNYNAKAHKYNSARQAALAANGVPEAVYDTLIQEVDSHLDLLHRYVALRKKILGLKDLQMWDMYVPLTGKPSLSYNFEEA
KEVAKKALKPLGEDYLKHVDYIFNNRVIDPVESKNKVTGAYSGGAYDTDPYELLNWEDNIDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDHITDSKTRAFILNYYLDSFKGTLFRQTQFAVFEQFLHEADAKGEPLTA
DTLDDVYGQINQHYYGDSVEPGGDIALEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGTPAERDAYLGFLKAGSSDY
PTEIMKRAGVDMTKPNYLEDAFKTFEKRLNEFESLIEK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=467295 H0G71_RS09010 WP_180808273.1 1809587..1811383(+) (pepF) [Lactobacillus crispatus strain B4]
ATGGCGATACCAAACAGAAATGAAGTCCCAGAAGAACTTAAGTGGGATTTGACCCGAATTTTTAAAAATGATGAAGAATG
GGAACAGGCCTATGCAGCTGCCCAAGAAAAAGTCGATCAACTCGGTGAATTAAAAGGCACATTAGCAAAATCTGGCAAGG
ATTTGTACGAAGGTTTAACCAAGATTTTGGCCGTTAAGCGCGAGGTGGAAAATATTTATGTTTATGCCACCATGTCCAGT
GATGTTGATACGGCTAATTCACATTATCTAGGCTACGTCAGCCGAGTGCAAAGCTTAGCTAACCAATTTGAAGCCGCTAC
TAGTTTTATTAACCCAGAAATCTTGAGCATCCCTAGTGACAAGCTAGCTGAATTTAAGCAAGCTGAACCAAGACTAAAGA
ATTACGCTCACTACTTGGAAATGATTACTAATAAGCGCCCTCACACCCTGCCAGCTGAACAAGAAAAATTAATCGCTGAC
GCTGGGGATGCTTTAGGCGTTTCCGAAAATACTTTTAACGTTTTGACCAATTCCGACATGGAATACGGCTACGTCCAAGA
TGATGATGGCAATATGGAACAATTGTCCGACGGTTTGTACTCATTATTAATTCAATCACAAAACCGTGACGTCAGAAAAG
GTGCCTTTGATACGCTCTATGCCACATACGGTCAATTTCAAAATTCGCTAGCTTCAACCTTGTCCGGCGTTGTGAAAAAG
CACAACTATAACGCTAAAGCACACAAATATAACTCTGCTCGCCAAGCTGCCTTAGCTGCAAACGGCGTACCTGAAGCAGT
TTACGATACTTTAATTCAAGAAGTTGATTCTCACCTTGACCTGCTCCATCGTTACGTTGCCTTGCGCAAGAAAATTTTAG
GCTTAAAAGATTTGCAAATGTGGGACATGTACGTGCCGCTAACTGGAAAGCCTTCTCTTTCTTATAACTTTGAAGAAGCT
AAGGAAGTTGCTAAAAAGGCATTGAAGCCTTTGGGCGAAGACTACTTAAAGCATGTCGATTACATCTTTAATAACCGCGT
GATCGATCCAGTTGAATCTAAAAATAAGGTAACTGGCGCCTACTCCGGTGGTGCTTATGATACTGATCCATATGAATTGC
TCAACTGGGAAGACAATATCGATTCACTCTATACCTTAGTTCACGAAACTGGTCACTCTGTTCACTCTTGGTACACCCGC
AATACCCAGCCTTATGTTTACGGTGACTACCCAATCTTCGTAGCTGAAATCGCGTCAACTACTAATGAAAATATTTTGAC
CGAATATTTCTTAGACCACATTACCGATTCTAAGACGCGGGCCTTTATCTTAAATTACTACCTTGATTCATTTAAAGGCA
CTTTATTCCGTCAAACTCAATTTGCCGTGTTTGAACAATTCTTGCACGAAGCCGATGCTAAGGGAGAACCACTGACCGCT
GACACTTTAGACGACGTTTACGGTCAAATTAATCAGCATTATTACGGCGATAGCGTTGAACCAGGCGGCGATATTGCCCT
TGAATGGTCACGAATTCCACACTTCTACTACAATTTCTATGTGTACCAATATGCGACTGGCTTTGCGGCTGCAACAGCAT
TAGCAAACAAGGTGGTTCATGGAACGCCTGCTGAGAGGGATGCCTACCTTGGCTTCCTTAAAGCTGGTTCAAGTGATTAC
CCAACTGAGATCATGAAGCGTGCTGGCGTGGACATGACTAAGCCTAACTACTTAGAAGATGCCTTCAAGACTTTTGAAAA
ACGGTTGAACGAATTTGAAAGCTTGATTGAGAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.684

99.331

0.513