Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H0G71_RS01860 Genome accession   NZ_CP059140
Coordinates   372515..373891 (+) Length   458 a.a.
NCBI ID   WP_005720413.1    Uniprot ID   A0A2A7RGN6
Organism   Lactobacillus crispatus strain B4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 367515..378891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0G71_RS01830 (H0G71_01830) - 368133..368315 (+) 183 WP_005720404.1 hypothetical protein -
  H0G71_RS01835 (H0G71_01835) - 368327..369007 (+) 681 WP_005724199.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  H0G71_RS01840 (H0G71_01840) - 369118..370053 (+) 936 WP_023488529.1 AAA family ATPase -
  H0G71_RS01845 (H0G71_01845) pepC 370115..371464 (-) 1350 WP_089146139.1 aminopeptidase C -
  H0G71_RS01850 (H0G71_01850) - 371533..371832 (-) 300 WP_180808430.1 hypothetical protein -
  H0G71_RS01855 (H0G71_01855) - 371964..372515 (+) 552 WP_005720412.1 dUTP diphosphatase -
  H0G71_RS01860 (H0G71_01860) radA 372515..373891 (+) 1377 WP_005720413.1 DNA repair protein RadA Machinery gene
  H0G71_RS01865 (H0G71_01865) gltX 373969..375468 (+) 1500 WP_005720415.1 glutamate--tRNA ligase -
  H0G71_RS01870 (H0G71_01870) cysS 375559..376992 (+) 1434 WP_013085835.1 cysteine--tRNA ligase -
  H0G71_RS01875 (H0G71_01875) - 376985..377428 (+) 444 WP_013085836.1 mini-ribonuclease III -
  H0G71_RS01880 (H0G71_01880) rlmB 377415..378170 (+) 756 WP_005720418.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  H0G71_RS01885 (H0G71_01885) - 378304..378849 (+) 546 WP_005720419.1 DNA-directed RNA polymerase subunit sigma -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50214.83 Da        Isoelectric Point: 7.1405

>NTDB_id=467287 H0G71_RS01860 WP_005720413.1 372515..373891(+) (radA) [Lactobacillus crispatus strain B4]
MARVKTQYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSTKATASRLIQKTGLNEPVKLDKIKAEKEERIVTKSE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSDLSEKYKVLYVSGEESANQIKLRADRLGVGQSNMLLYPETDMHDI
REQINDVKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHSYRILHSVKNRFGAANEIGMFEMVNEGLREVTNPSSIFLDQRLPNSTGSAVVVSLEGTRPLLAEIQALVTPTA
FGYAKRTTSGISFNKASLLLAVLEKRGNLMLQNQDVYLTATGGIKLNEPAIDLAIAMAVASSYTDKEISPTDCFVGEVGL
TGEVRRVDKIDARVKEAAKVGFKRIFIPRHNMYSGLKDHGIEVIPVSSIPQALKLVFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=467287 H0G71_RS01860 WP_005720413.1 372515..373891(+) (radA) [Lactobacillus crispatus strain B4]
ATGGCTAGAGTAAAAACACAATATAAGTGTCGTTCTTGCGGCTATATTTCGGCAAGTTATTTAGGCCGCTGCCCTAACTG
TGGTGCCTGGAATCAATTTGAAAAAGAAACTGAAGAAGTGCAAAAGCGTTCTACTAAGGCAACTGCTAGTCGTTTGATTC
AGAAGACTGGATTAAATGAACCGGTAAAGCTGGATAAGATTAAAGCTGAAAAAGAAGAACGAATTGTCACTAAATCTGAG
GAATTAAACCGCGTTTTAGGTGGTGGTATTGTGCCAGGCTCACTAGTTTTAATTGGTGGAGATCCCGGAATTGGTAAGTC
AACCTTGATGTTACAAATTATGAGTGACTTATCTGAAAAATATAAGGTGCTTTACGTTTCGGGAGAAGAATCAGCTAACC
AAATCAAATTGCGGGCTGACCGACTGGGTGTAGGTCAAAGTAATATGCTCTTATATCCAGAGACTGACATGCATGATATT
CGCGAACAAATCAATGATGTTAAGCCTGACTTTGTTGTAATCGACTCCATTCAAACTATGAATGAACCAAGTCTTGATTC
GATGACCGGCTCTGCCTCACAGGTTCGTGAAGTAACAAGTGAATTAATGAAAATTGCCAAGATGGATGCCATTACAGTTT
TTGTTATCGGCCACGTTACAAAAGAGGGTGCGATTGCTGGGCCTAAGATCTTGGAACATATGGTGGATACCGTTCTCTAT
TTTGAAGGGGATGAACACCATTCTTACCGAATTTTGCATTCTGTTAAAAACCGTTTTGGAGCAGCAAACGAAATTGGAAT
GTTTGAAATGGTTAATGAAGGCTTAAGAGAGGTAACTAATCCATCATCAATTTTTCTGGACCAAAGATTACCTAATTCTA
CTGGCTCTGCTGTGGTGGTATCGCTTGAAGGAACTAGGCCACTTTTAGCAGAAATTCAGGCTTTGGTTACTCCGACAGCT
TTTGGCTATGCTAAAAGGACCACGTCAGGTATTAGTTTTAACAAAGCTTCATTGCTGCTAGCGGTGCTTGAAAAGCGGGG
AAACTTAATGTTGCAGAATCAAGATGTCTATTTGACTGCAACTGGTGGGATTAAATTGAATGAACCAGCAATTGATTTAG
CAATTGCCATGGCAGTTGCATCCAGTTATACCGATAAAGAAATTTCGCCGACAGATTGTTTTGTAGGCGAAGTGGGCTTA
ACTGGTGAAGTTCGCCGAGTTGATAAAATCGATGCACGAGTAAAAGAAGCGGCTAAAGTAGGGTTTAAGCGGATCTTTAT
TCCACGGCATAATATGTATTCTGGATTAAAAGATCATGGCATTGAAGTAATTCCCGTTTCGAGTATTCCCCAAGCTTTAA
AATTAGTTTTTGGCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-223)

Subunit ChlI of Mg-chelatase (ChlI)

(363-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7RGN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

57.549

99.782

0.574
  radA Streptococcus pneumoniae D39

57.549

99.782

0.574
  radA Streptococcus pneumoniae R6

57.549

99.782

0.574
  radA Streptococcus pneumoniae TIGR4

57.549

99.782

0.574
  radA Streptococcus mitis SK321

57.549

99.782

0.574
  radA Streptococcus mitis NCTC 12261

57.549

99.782

0.574
  radA Bacillus subtilis subsp. subtilis str. 168

55.773

100

0.559