Detailed information NTG0467211

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6J79_RS22340
• Genome accession: NZ_CP069459
• Coordinates: 4618333..4619325 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FDAARGOS_1249
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4613333..4624325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6J79_RS22310 (I6J79_22310)	ispD	4613394..4614104 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6J79_RS22315 (I6J79_22315)	ispF	4614104..4614583 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6J79_RS22320 (I6J79_22320)	truD	4614580..4615629 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
I6J79_RS22325 (I6J79_22325)	surE	4615610..4616371 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6J79_RS22330 (I6J79_22330)	pcm	4616365..4616991 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I6J79_RS22335 (I6J79_22335)	nlpD	4617176..4618270 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
I6J79_RS22340 (I6J79_22340)	rpoS	4618333..4619325 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I6J79_RS22345 (I6J79_22345)	ygbN	4619419..4620783 (-)	1365	WP_000104441.1	GntP family transporter	-
I6J79_RS22350 (I6J79_22350)	ygbM	4620872..4621648 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
I6J79_RS22355 (I6J79_22355)	ygbL	4621653..4622291 (-)	639	WP_001278994.1	aldolase	-
I6J79_RS22360 (I6J79_22360)	otnK	4622288..4623550 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=467211 I6J79_RS22340 WP_000081550.1 4618333..4619325(+) (rpoS) [Escherichia coli strain FDAARGOS_1249]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=467211 I6J79_RS22340 WP_000081550.1 4618333..4619325(+) (rpoS) [Escherichia coli strain FDAARGOS_1249]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715