Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H0Z12_RS19190 Genome accession   NZ_CP059084
Coordinates   3857744..3859126 (-) Length   460 a.a.
NCBI ID   WP_041930968.1    Uniprot ID   -
Organism   Pantoea ananatis strain OC5a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3852744..3864126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0Z12_RS19165 (H0Z12_19180) - 3853180..3853869 (-) 690 WP_207806407.1 molecular chaperone -
  H0Z12_RS19170 (H0Z12_19185) - 3853909..3854463 (-) 555 WP_014606641.1 fimbrial protein -
  H0Z12_RS19175 (H0Z12_19190) - 3854706..3855155 (-) 450 WP_041930969.1 hypothetical protein -
  H0Z12_RS19180 (H0Z12_19195) - 3855152..3856084 (-) 933 WP_207806408.1 winged helix-turn-helix domain-containing protein -
  H0Z12_RS19185 (H0Z12_19200) nadR 3856413..3857651 (-) 1239 WP_014606644.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  H0Z12_RS19190 (H0Z12_19205) radA 3857744..3859126 (-) 1383 WP_041930968.1 DNA repair protein RadA Machinery gene
  H0Z12_RS19195 (H0Z12_19210) serB 3859140..3860117 (-) 978 WP_014595282.1 phosphoserine phosphatase -
  H0Z12_RS19200 (H0Z12_19215) - 3860225..3860893 (+) 669 WP_013024512.1 YtjB family periplasmic protein -
  H0Z12_RS19205 (H0Z12_19220) yjjG 3861022..3861702 (-) 681 WP_207806409.1 pyrimidine 5'-nucleotidase -
  H0Z12_RS19210 (H0Z12_19225) rimI 3861722..3862162 (-) 441 WP_014606647.1 ribosomal protein S18-alanine N-acetyltransferase -
  H0Z12_RS19215 (H0Z12_19230) - 3862134..3862544 (-) 411 WP_013024509.1 DNA polymerase III subunit psi -
  H0Z12_RS19220 (H0Z12_19235) rsmC 3862650..3863681 (+) 1032 WP_014606648.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49478.15 Da        Isoelectric Point: 7.6663

>NTDB_id=467180 H0Z12_RS19190 WP_041930968.1 3857744..3859126(-) (radA) [Pantoea ananatis strain OC5a]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAQNMKTLYVTGEESLQQVAMRAHRLGLPTENLNMLSETSIE
QICLIAEQEAPQIMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKPIEGMRVYSVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=467180 H0Z12_RS19190 WP_041930968.1 3857744..3859126(-) (radA) [Pantoea ananatis strain OC5a]
TTGGCCAAAGCGGCAAAACGCGCATTTGTTTGTAACGAGTGTGGCGCAGACTATCCGCGCTGGCAGGGGCAATGCAGCGC
CTGTCACGCCTGGAACACCATTACCGAGGTACGGATTGCCGCCTCACCCGCTGCAGCGCGCAATGAGCGCCTCAGCGGTT
ATGCGGGCAGTGCCGGGACCAGTCGGGTGCAAAAGCTGTCCGAAATCAGCCTGGAAGCCTTGCCCCGTTTCTCGACCAGC
TTTAAAGAATTTGACCGTGTGCTGGGCGGTGGCGTGGTGCCCGGCAGTGCCATTCTGATTGGTGGTAATCCCGGGGCCGG
TAAATCCACTTTGTTGCTGCAGGTCATGTGCCGCTTAGCGCAGAACATGAAAACGCTGTATGTCACCGGCGAAGAATCTT
TACAGCAGGTGGCAATGCGTGCCCATCGGCTGGGTTTGCCGACTGAAAACCTGAACATGCTGTCGGAAACAAGCATCGAA
CAGATCTGCCTGATCGCCGAGCAGGAAGCGCCGCAAATCATGGTCATCGACTCCATCCAGGTGATGCACATGGCCGATAT
CCAGTCTTCACCCGGCAGCGTCGCCCAGGTGCGCGAAACCGCCGCTTATCTGACGCGCTTTGCCAAAACCCGCGGCGTGG
CGATTATCATGGTGGGCCATGTCACCAAAGACGGATCGCTGGCCGGGCCGAAGGTCCTTGAGCACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCGCGCTTCCGCACCTTGCGCAGCCATAAAAACCGTTTTGGTGCCGTGAATGAACT
GGGGGTTTTTGCCATGACGGAGCAGGGCATGCGTGAAGTGAGCAATCCTTCCGCCATTTTCCTGTCGCGCGGTGAAGAGA
TTACGTCGGGCAGTTCGGTCATGGTGCTGTGGGAAGGAACCCGGCCATTGCTGGTCGAGATTCAGGCGCTGGTGGACCAT
TCGATGATGGGGAATCCCCGTCGTGTTGCCGTCGGGCTTGAACAAAACCGCCTGGCGATTCTGCTGGCGGTACTGCATCG
TCACGGTGGATTGCAAATGGCGGATCAGGATGTGTTCGTCAACGTCGTGGGCGGCGTGAAAGTCACAGAAACCAGCGCCG
ACCTGGCGCTGATGCTGTCAATGGTTTCCAGCCTGCGCGATCGCCCCTTGCCGCAGGATCTGGTTATCTTTGGCGAAGTC
GGGCTGGCCGGCGAAATTCGCCCGGTGCCCAGCGGCCAGGAACGGATTTCAGAAGCGGCTAAACATGGCTTCAAACGGGC
GATTGTGCCTGCCGGTAACGCGCCGAAAAAGCCGATTGAGGGCATGCGCGTCTACAGCGTGAAAAAGTTGGCGGATGCGC
TGGCGATTCTCGATGATCTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.807

100

0.489
  radA Streptococcus mitis NCTC 12261

43.516

98.913

0.43
  radA Streptococcus mitis SK321

43.297

98.913

0.428
  radA Streptococcus pneumoniae Rx1

44.78

93.696

0.42
  radA Streptococcus pneumoniae D39

44.78

93.696

0.42
  radA Streptococcus pneumoniae R6

44.78

93.696

0.42
  radA Streptococcus pneumoniae TIGR4

44.78

93.696

0.42