Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   H0S56_RS13120 Genome accession   NZ_CP059081
Coordinates   2760421..2760747 (-) Length   108 a.a.
NCBI ID   WP_026055760.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain 12CE1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2755421..2765747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS13100 (H0S56_13095) - 2755598..2756257 (-) 660 WP_004729299.1 FHA domain-containing protein -
  H0S56_RS13105 (H0S56_13100) gspD 2756320..2758602 (-) 2283 WP_195725249.1 type II secretion system secretin GspD -
  H0S56_RS13110 (H0S56_13105) - 2758641..2759495 (-) 855 WP_195725250.1 type II secretion system protein N -
  H0S56_RS13115 (H0S56_13110) gspN 2759495..2760238 (-) 744 WP_195725251.1 type II secretion system protein N -
  H0S56_RS13120 (H0S56_13115) hns 2760421..2760747 (-) 327 WP_026055760.1 H-NS family nucleoid-associated regulatory protein Regulator
  H0S56_RS13125 (H0S56_13120) - 2760889..2761317 (-) 429 WP_195726094.1 thioesterase family protein -
  H0S56_RS13130 (H0S56_13125) - 2761326..2762519 (-) 1194 WP_195725252.1 heme biosynthesis protein HemY -
  H0S56_RS13135 (H0S56_13130) - 2762526..2763365 (-) 840 WP_195725253.1 hypothetical protein -
  H0S56_RS13140 (H0S56_13135) - 2763362..2764141 (-) 780 WP_195725254.1 uroporphyrinogen-III synthase -
  H0S56_RS13145 (H0S56_13140) hemC 2764141..2765064 (-) 924 WP_005105424.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12318.07 Da        Isoelectric Point: 7.0196

>NTDB_id=467140 H0S56_RS13120 WP_026055760.1 2760421..2760747(-) (hns) [Acinetobacter lwoffii strain 12CE1]
MMPDITHLSVEELKRLQAEAESLIASKKDQEIEDAYQQILAVAEKVGMTVEQLLEFGASKRKKSSRKSVEPRYRSKSNPD
DTWTGRGKQPRWLVAELEKGAKLDDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=467140 H0S56_RS13120 WP_026055760.1 2760421..2760747(-) (hns) [Acinetobacter lwoffii strain 12CE1]
ATTATGCCAGATATTACGCATTTATCAGTAGAAGAGTTAAAACGTTTACAAGCAGAAGCAGAATCACTGATTGCTTCAAA
AAAAGATCAAGAGATTGAAGACGCTTATCAGCAAATCTTGGCAGTTGCCGAGAAAGTGGGTATGACAGTTGAACAGTTAC
TTGAATTTGGTGCGTCTAAACGTAAAAAATCATCACGTAAGTCGGTTGAGCCGCGTTACCGTAGCAAAAGCAATCCGGAC
GATACCTGGACTGGCCGTGGTAAACAGCCGCGCTGGTTGGTGGCTGAATTGGAAAAAGGCGCAAAGCTGGACGATTTCCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787