Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   H0S56_RS12840 Genome accession   NZ_CP059081
Coordinates   2691247..2693469 (+) Length   740 a.a.
NCBI ID   WP_195725227.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain 12CE1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2686247..2698469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS12820 (H0S56_12815) lnt 2687044..2688603 (+) 1560 WP_195725224.1 apolipoprotein N-acyltransferase -
  H0S56_RS12825 (H0S56_12820) - 2688757..2689092 (-) 336 WP_195725225.1 hypothetical protein -
  H0S56_RS12830 (H0S56_12825) gspG 2689377..2689811 (-) 435 WP_004278567.1 type II secretion system major pseudopilin GspG -
  H0S56_RS12835 (H0S56_12830) gspF 2689891..2691096 (-) 1206 WP_195725226.1 type II secretion system inner membrane protein GspF -
  H0S56_RS12840 (H0S56_12835) priA 2691247..2693469 (+) 2223 WP_195725227.1 primosomal protein N' Machinery gene
  H0S56_RS12845 (H0S56_12840) - 2693545..2695397 (+) 1853 Protein_2493 cation:proton antiporter -
  H0S56_RS12850 (H0S56_12845) - 2695448..2696323 (+) 876 WP_004647344.1 Hsp33 family molecular chaperone HslO -
  H0S56_RS12855 (H0S56_12850) - 2696645..2697106 (+) 462 WP_005102907.1 DUF2147 domain-containing protein -
  H0S56_RS12860 (H0S56_12855) - 2697591..2697920 (+) 330 WP_004278573.1 chaperone modulator CbpM -
  H0S56_RS12865 (H0S56_12860) - 2698010..2698273 (+) 264 WP_004729352.1 YdcH family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84130.23 Da        Isoelectric Point: 8.9062

>NTDB_id=467139 H0S56_RS12840 WP_195725227.1 2691247..2693469(+) (priA) [Acinetobacter lwoffii strain 12CE1]
MQNSHPYSSPLYRVRVAVPVHVFDCFDYTMSTAQFEQAQIGARVLVSFGRQNLVGVIIEKLSADTPPDPRFKLKAVTELL
DERAIIDAKVLSLLTWSAQYYQFPIGEVVHSALPTLLRQGKPYNLLARTWKLLAPDAEAKVRRSDKQQEAYRILKLHPVG
TTENVLNMAGIETATLKALEKKEICACVLEPQDFNPQPMQLAQMPLTANPEQKHAVEQVLKYRNQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQSAETGKASIVLGTRSAIYTPM
PNLSLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVILGSATPSIDSYALVQHGKMQALELNQRAGTALMPKIHI
LDLKVAQKKHGISLQLIQDIKKRLEKKEQVLIFLNRRGYAPVLLCGSCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHQELITLGMGTGKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHALLNTLVNENYRVFAQQTLKERQMARM
PPYRYAILIRCESKDQAQNTEFLQKHAALLRQYPDLALDIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYVRSWWQNM
LQDKPSSMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=467139 H0S56_RS12840 WP_195725227.1 2691247..2693469(+) (priA) [Acinetobacter lwoffii strain 12CE1]
ATGCAAAATTCTCACCCATATTCAAGTCCACTTTATCGCGTACGCGTTGCTGTACCTGTGCATGTATTTGATTGTTTTGA
TTACACGATGAGTACAGCACAATTTGAACAGGCACAGATTGGCGCACGTGTACTGGTGTCGTTTGGTCGGCAGAATCTGG
TCGGGGTGATTATCGAAAAACTATCCGCAGACACTCCTCCCGATCCGCGCTTTAAACTTAAGGCAGTGACCGAACTACTT
GATGAACGCGCCATTATAGATGCCAAAGTTTTAAGTTTGTTGACATGGTCAGCGCAGTATTACCAGTTTCCGATCGGTGA
AGTCGTCCACAGTGCCCTGCCGACTCTGTTGCGTCAGGGTAAGCCTTATAACCTGCTGGCCCGTACCTGGAAATTACTGG
CCCCTGATGCCGAGGCCAAAGTACGCCGTTCGGACAAGCAGCAGGAAGCTTACCGGATTTTAAAACTGCATCCGGTCGGG
ACCACTGAAAATGTGCTGAACATGGCCGGGATTGAAACCGCGACCTTAAAAGCGCTGGAGAAAAAAGAGATTTGCGCCTG
TGTGCTGGAGCCACAAGATTTCAATCCGCAGCCGATGCAGCTGGCACAAATGCCGCTGACCGCCAATCCTGAACAAAAAC
ATGCAGTCGAACAGGTATTAAAATATCGCAATCAATATCAAGCTTTTTTACTGGATGGTCTGACCGGCAGCGGTAAAACT
GAAGTGTATTTGCAGATCATGGAACAGGTACTGAAACAGGGCAAACAGGTGCTGGTGCTGGTGCCGGAAATCGGCCTGAC
GCCGCAAACCATCAGCCGTTTTCAGTCCCGTTTTCATTGCCATATTGCGTTGCTGCATTCCGGGCTGAATGATTCCAAAC
GGCTACAAGCCTGGCAGTCGGCGGAAACCGGCAAAGCCTCAATCGTACTCGGTACACGTTCTGCCATTTATACCCCGATG
CCGAATCTGAGCCTGATCATTCTGGATGAAGAACATGACCTGTCCTTTAAACAGCAGGAAGGCTTCCGCTATCATGCCCG
CGATGTCGCCCTGTACCGCGGCCATTTACAGCAATGTCCGGTAATCTTAGGGTCAGCCACACCAAGCATTGACAGTTATG
CGCTGGTGCAACATGGCAAGATGCAGGCACTGGAGCTGAACCAGCGTGCCGGCACGGCCTTGATGCCCAAAATCCATATT
CTGGATTTAAAAGTTGCGCAAAAAAAGCATGGGATTAGCCTTCAATTGATTCAGGACATCAAAAAGCGCCTGGAGAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGCCGTGGCTATGCCCCCGTCCTGCTGTGTGGCAGCTGTGGCTGGCAGGCGAAAT
GTCCGCACTGTGATGCCAACTTCACTGTACACCGCCAGCCTTATCAGCATCTACATTGCCATCACTGCGGTACTATTCAC
CGTATGCCGGAACACTGCCCACAATGTCAGCATCAGGAACTGATTACACTGGGTATGGGCACCGGCAAAGTCGAAGAGCA
TCTGAATGAGCTCTTTCCGGATTTTGAGGTGATTCGGGTCGATCGCGATTCCACCAGTCGGGTCGGCAGCTGGCAAAAAA
TCTATGACAAGATTCAGAAAAGCGAACCTGCCATTTTGCTTGGCACCCAGATGCTGGCCAAAGGCCATCATTTTCCTTAT
GTGACGCTGGTGGCGATTCTGGATATCGATTCCGGTCTGCTCAGTGTGGATTTCCGTGCTACTGAACGGACTGCACAACT
GATTGTGCAGGTGGCAGGCCGCGCAGGCCGTGGTGAACATAAGGGTGATGTTTACCTACAGACCCTCAGACCTGATCATG
CCCTGCTGAATACCCTGGTCAATGAAAATTATCGCGTATTTGCCCAGCAAACCTTAAAAGAACGGCAGATGGCCAGAATG
CCGCCCTACCGTTATGCCATCCTGATTCGCTGTGAATCCAAGGATCAGGCACAAAATACCGAATTCTTACAGAAACATGC
AGCACTCCTCAGGCAATATCCTGATCTGGCGCTGGACATCTGGGGACCAATTCCTGCGCCAATGGAACGTAAGGCCGGAC
GCTATCAGTCGCATATGGTGCTATTGTCAGCGGATCGTCCACGTTTGCATTACTATGTGCGTAGCTGGTGGCAAAACATG
CTGCAGGACAAACCTTCTAGCATGAAGCTCACGCTGGACATCGACCCTCAGGAACTGAGCTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(209-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.02

99.324

0.705