Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I6J84_RS21340 Genome accession   NZ_CP069453
Coordinates   4441586..4443013 (+) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain FDAARGOS_1254     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4436586..4448013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J84_RS21310 (I6J84_21310) pduU 4436963..4437313 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  I6J84_RS21315 (I6J84_21315) - 4437318..4437761 (+) 444 WP_001189438.1 EutP/PduV family microcompartment system protein -
  I6J84_RS21320 (I6J84_21320) tmaR 4437862..4438191 (-) 330 WP_000450409.1 DUF496 family protein -
  I6J84_RS21325 (I6J84_21325) yeeA 4438363..4439421 (-) 1059 WP_001200890.1 FUSC family protein -
  I6J84_RS21330 (I6J84_21330) sbmC 4439619..4440092 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  I6J84_RS21335 (I6J84_21335) dacD 4440211..4441377 (-) 1167 WP_001580744.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  I6J84_RS21340 (I6J84_21340) sbcB 4441586..4443013 (+) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  I6J84_RS21345 (I6J84_21345) plaP 4443087..4444445 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  I6J84_RS21350 (I6J84_21350) yoeI 4444435..4444497 (-) 63 WP_010723108.1 membrane protein YoeI -
  I6J84_RS21355 (I6J84_21355) yeeY 4444712..4445641 (-) 930 WP_000803346.1 LysR substrate-binding domain-containing protein -
  I6J84_RS21360 (I6J84_21360) yeeZ 4445687..4446511 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  I6J84_RS21365 (I6J84_21365) yoeB 4446594..4446848 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  I6J84_RS21370 (I6J84_21370) yefM 4446845..4447096 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  I6J84_RS21375 (I6J84_21375) hisL 4447379..4447429 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=467134 I6J84_RS21340 WP_000980557.1 4441586..4443013(+) (sbcB) [Escherichia coli strain FDAARGOS_1254]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=467134 I6J84_RS21340 WP_000980557.1 4441586..4443013(+) (sbcB) [Escherichia coli strain FDAARGOS_1254]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAATGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583