Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   H0S56_RS03590 Genome accession   NZ_CP059081
Coordinates   764486..768937 (+) Length   1483 a.a.
NCBI ID   WP_195725677.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain 12CE1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 759486..773937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS03565 (H0S56_03565) - 759944..760591 (-) 648 WP_191112538.1 hypothetical protein -
  H0S56_RS03570 (H0S56_03570) pilG 760878..761261 (+) 384 WP_064096414.1 twitching motility response regulator PilG Regulator
  H0S56_RS03575 (H0S56_03575) - 761289..761657 (+) 369 WP_064096413.1 response regulator -
  H0S56_RS03580 (H0S56_03580) - 761663..762199 (+) 537 WP_064096412.1 chemotaxis protein CheW -
  H0S56_RS03585 (H0S56_03585) - 762246..764318 (+) 2073 WP_195725676.1 methyl-accepting chemotaxis protein -
  H0S56_RS03590 (H0S56_03590) chpA 764486..768937 (+) 4452 WP_195725677.1 Hpt domain-containing protein Regulator
  H0S56_RS03595 (H0S56_03595) - 768941..769399 (+) 459 WP_180180481.1 hypothetical protein -
  H0S56_RS03600 (H0S56_03600) dapE 769465..770601 (-) 1137 WP_195725678.1 succinyl-diaminopimelate desuccinylase -
  H0S56_RS03605 (H0S56_03605) - 770723..770875 (-) 153 WP_004280704.1 entericidin A/B family lipoprotein -
  H0S56_RS03610 (H0S56_03610) - 770988..771863 (-) 876 WP_195725679.1 DUF1853 family protein -
  H0S56_RS03615 (H0S56_03615) - 771951..772304 (+) 354 Protein_693 YbaN family protein -
  H0S56_RS03620 (H0S56_03620) elsL 772430..772963 (+) 534 WP_195725680.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1483 a.a.        Molecular weight: 165870.96 Da        Isoelectric Point: 4.3302

>NTDB_id=467124 H0S56_RS03590 WP_195725677.1 764486..768937(+) (chpA) [Acinetobacter lwoffii strain 12CE1]
MKEILKNLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELNALFPEWLSNPDHQENLKTIRRHFHTLKGSGRMVGAKSA
GEMAWAVEDTLNRVLSGSIQLTPTVQKFAQAVLNVYQYALYQKFKHVQQLDLDLRPMVLLGQQLQRQISPEPALEELLAL
ADHLTAEGQMTGLELADNEPSEAELTIAPVEVPVRSDIEETVAIFIEEAEEHLETIATFLRTEDEKSQDYNALIRAIHTL
RGSSSMAQIDQIFEASSKVEHLFKTLLQDEIVSTSKETALLIQYAEFVSDYLHLLRQGNTAKLDAVYATFERVWHDYGFA
VTETNSIQTQGLVSKLVELDIDLLLDAEFEFDKRAQVDYPEYIQALSQQAAELLAHTESRAAQGIHEFTADLKLAYDALL
EKPVLLNSDYAYELFAQAHQEFIHLFDTLAAGQRVILNDEIQKILSELSAFVQQDLEIFAEDTSNQNVELSSEATQVAET
VATGSVDFAGLSQRIAADRQQQQSTETNRDFDEELLSIFLEEADELLAGIDEDLNTWSKKQDDTTSLNNLMRHLHTLKGG
ANMIAALHIGLIAHELESIYERVIRQQIAVTPALIQIIRLVQDNVSDRIQSIREDGIDYPAPEAIAILQNIQVLVSGQAV
AAVESTGAVVEVAEVQATSIPEPQLEDSATTEQPATDLAEAEELLEILESPEATEDTPVERSEEDELKSIVEESFLEESE
EILANAEKLLSQWFDQRSDRSLLLQLQRAAHSIKGGARMVDVEEVASIAYELETTFEQFAVYQFNSNAYDGLLQKTLVWL
RQAIFQRDYNGFEPLHSSLKKIAYVDVTAQLPERLAKTDNLVVSTDFGFVEGDGTEPPQMMGEWANSGTSDSNNEMIRIS
ADLVEKMIDLSGENSINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSENSRYADFDPLEMDQYS
SLNQLSKSLAESASDLVDFKSTLADKIRETEGLLLQQSRIQAEIQESLMRTRLVPFDRMLPRLQRIVRQTSTTLNRPAEL
IVQNTEGELDRNILERLVTPFEHMLRNAIDHGLEDIADRIALNKPEVGSIVLNISRQGTDVIVSFSDDGKGIDAEKIREK
ALSLDLIKADQVIDQEEILQFIFHPGFSTAKAVTQISGRGVGLDVVQSEIKSLGGHVSVSSELGKGTVFTIRVPTTVAVS
DALMVKVGDQQYAISLAQIDRIVRIAPTTLESYFNSKDDYFKIDGANYKLRYLSEFVGNQPIPRLNNVGHSLPVLLIKGN
SGQTIALLVDQLVGSRAQIVVKPIGQQFANVGVVAGATILGDGQVCLILDGQNVARQIQATQRVKQLNDQRDGSRNSNAR
RLVMIVDDSVTVRKVTSRLLERQGYDIVTAKDGVDAIEQLENVRPDLMLLDIEMPRMDGFEVTNLVRHHDIHRDLPIIMI
TSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLIAEKQR

Nucleotide


Download         Length: 4452 bp        

>NTDB_id=467124 H0S56_RS03590 WP_195725677.1 764486..768937(+) (chpA) [Acinetobacter lwoffii strain 12CE1]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACGACAACGCTTCCTGAAGATAGTTATCTTGACCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAGGAAATCGAAGAGATCTTCGTTGAGTTAAATGCTTTATTTCCAGAATGGTTGAGCAATCCAGATC
ATCAAGAAAATCTGAAGACCATTCGCCGCCATTTTCACACCCTGAAAGGTTCAGGCCGCATGGTCGGGGCAAAATCGGCA
GGGGAAATGGCCTGGGCGGTTGAAGATACCTTAAACCGGGTTTTGTCCGGTTCGATTCAGCTAACACCGACGGTACAGAA
ATTTGCCCAAGCGGTACTGAATGTCTATCAATATGCTTTATATCAAAAATTCAAACATGTACAGCAATTAGATCTCGATC
TGCGTCCAATGGTGCTGTTGGGACAACAATTACAACGACAAATTTCGCCTGAACCTGCATTGGAAGAATTACTGGCATTG
GCAGATCATTTGACTGCTGAAGGTCAGATGACAGGTCTTGAGCTTGCAGACAATGAGCCAAGTGAAGCTGAGCTAACAAT
AGCGCCAGTAGAAGTACCGGTTCGCAGTGATATCGAAGAAACTGTGGCGATCTTTATTGAAGAAGCAGAAGAACATCTGG
AAACGATTGCCACTTTCCTTCGCACTGAAGATGAAAAATCACAAGATTATAATGCGCTGATTCGTGCGATTCATACCTTG
CGCGGCAGTTCATCCATGGCGCAGATTGATCAGATTTTTGAGGCCAGTTCTAAAGTAGAGCATCTGTTCAAAACCTTGCT
ACAAGATGAAATTGTCTCAACCTCAAAAGAAACTGCTTTACTGATTCAGTATGCCGAGTTTGTCAGTGACTATCTGCATT
TGTTACGTCAGGGCAATACTGCAAAACTGGATGCAGTATATGCCACCTTTGAGCGTGTCTGGCATGATTATGGCTTTGCA
GTTACTGAAACCAATAGCATTCAGACGCAAGGCTTGGTGTCCAAACTGGTTGAGCTGGATATTGATCTGTTATTGGATGC
CGAGTTTGAATTTGATAAACGCGCCCAAGTCGATTATCCGGAATATATTCAGGCACTCAGCCAGCAGGCTGCAGAATTGC
TGGCACATACAGAAAGCCGGGCAGCGCAGGGAATTCATGAATTCACTGCCGATCTGAAATTGGCTTATGATGCGCTGCTT
GAAAAGCCAGTGCTGCTAAACAGCGATTATGCTTATGAACTGTTCGCACAGGCGCATCAGGAATTTATTCATTTATTTGA
TACCTTGGCCGCAGGACAGCGCGTCATTCTGAATGATGAGATTCAAAAAATACTCAGTGAACTGTCTGCATTTGTGCAGC
AGGATCTCGAGATATTTGCTGAAGATACTAGCAATCAGAATGTTGAGCTAAGCTCAGAGGCCACACAGGTGGCTGAAACT
GTCGCGACTGGTAGTGTGGATTTTGCTGGTTTGAGCCAACGTATCGCTGCGGATCGTCAACAGCAGCAAAGTACTGAAAC
CAACCGTGATTTTGATGAAGAATTACTAAGTATCTTCCTGGAAGAAGCGGATGAATTGCTGGCAGGGATTGATGAAGATC
TGAATACCTGGAGTAAAAAACAGGATGATACAACCTCACTGAACAATCTGATGCGTCATTTGCATACCTTAAAAGGTGGT
GCAAACATGATTGCAGCTTTGCATATCGGTTTGATTGCACATGAACTGGAAAGTATTTATGAGCGGGTGATCCGTCAGCA
AATTGCCGTGACACCTGCTTTAATCCAGATTATTCGTCTGGTTCAGGATAACGTTTCCGATCGTATTCAATCCATTCGGG
AAGACGGTATTGATTATCCTGCACCAGAAGCGATTGCGATTCTGCAAAATATTCAGGTGCTGGTGTCTGGACAAGCTGTT
GCTGCTGTTGAAAGTACGGGTGCTGTAGTTGAAGTTGCAGAGGTCCAAGCGACATCAATTCCTGAACCGCAACTTGAAGA
CTCAGCAACGACTGAACAGCCTGCAACTGATCTGGCCGAAGCTGAAGAATTACTGGAAATCTTGGAATCTCCTGAAGCTA
CTGAAGACACACCAGTAGAACGTTCTGAAGAAGACGAGCTGAAATCCATTGTTGAAGAATCTTTCCTCGAAGAATCCGAA
GAGATTCTGGCGAATGCCGAGAAGCTCCTCAGTCAATGGTTTGATCAGCGTAGTGACCGTAGTTTATTGCTGCAATTACA
GCGTGCTGCCCATAGTATCAAGGGTGGCGCACGTATGGTAGATGTTGAAGAAGTGGCCAGTATTGCCTATGAGCTGGAAA
CGACTTTCGAACAGTTTGCGGTCTACCAATTTAACTCGAATGCTTATGATGGATTACTGCAGAAAACGCTGGTCTGGTTG
AGACAGGCGATTTTCCAGCGTGACTATAACGGTTTTGAGCCGCTGCACAGTAGTCTGAAAAAGATTGCTTATGTGGACGT
TACTGCACAGTTGCCTGAGCGTCTGGCGAAAACAGATAATCTGGTGGTCAGTACCGACTTCGGCTTTGTTGAAGGTGATG
GTACTGAGCCGCCACAGATGATGGGTGAGTGGGCGAATAGCGGTACCAGCGATAGTAATAACGAGATGATCCGTATCTCT
GCTGATCTGGTCGAGAAGATGATTGACCTGTCCGGTGAGAACTCGATTAACCGTTCGCGTATCGAGATGGACCTGGGTCA
GCTAGGCAATACCTTGAACGAGATGGAATTGGCGATCAAACGTCTTGCCGATCAGTTACGTCGAATGGAAGGCGAGCTGG
AATCACAGATTATTGCCAAACATGGTTCAGAGAACTCGCGCTATGCCGACTTTGACCCGCTGGAAATGGACCAATATTCG
TCGCTCAACCAGCTGTCTAAATCACTGGCAGAATCTGCATCAGATTTGGTCGACTTCAAGAGTACACTGGCCGACAAGAT
TCGCGAAACTGAAGGTCTGTTATTGCAACAATCCCGTATTCAGGCGGAAATTCAGGAAAGCCTGATGCGTACCCGTCTGG
TTCCATTTGATCGGATGTTGCCGCGTTTACAGCGTATCGTGCGTCAAACTTCGACGACCTTGAACCGTCCTGCAGAACTG
ATCGTACAGAATACCGAAGGTGAACTGGACCGTAACATTCTCGAGCGTCTGGTTACACCATTTGAGCACATGCTGCGTAA
TGCGATTGACCATGGTCTGGAAGATATTGCAGATCGTATCGCCCTGAACAAGCCGGAAGTCGGTTCGATTGTCTTGAACA
TCAGCCGCCAGGGAACCGATGTAATTGTATCCTTTAGTGATGATGGTAAGGGGATTGATGCAGAGAAGATTCGTGAAAAA
GCGCTGAGTCTGGATCTAATCAAAGCGGATCAAGTCATTGATCAGGAAGAAATCCTGCAATTTATCTTCCATCCTGGTTT
CAGTACCGCGAAAGCAGTGACCCAGATTTCTGGTCGTGGTGTCGGTCTGGATGTGGTACAAAGCGAGATCAAATCACTGG
GCGGCCATGTGTCAGTGAGCTCGGAACTGGGCAAGGGTACGGTCTTTACGATTCGCGTACCGACGACCGTAGCGGTCAGC
GATGCCTTGATGGTGAAAGTGGGCGATCAGCAATATGCGATTTCTCTGGCGCAGATTGACCGAATCGTGCGTATTGCACC
GACCACATTGGAAAGCTATTTCAACAGTAAAGATGACTATTTCAAGATCGATGGCGCAAACTATAAGCTGCGTTATCTGT
CTGAGTTTGTTGGCAACCAGCCGATTCCACGTCTGAATAATGTTGGTCATTCATTGCCGGTGCTGTTGATTAAAGGTAAT
AGTGGTCAAACCATTGCCTTGCTGGTCGATCAGCTGGTCGGTTCACGAGCGCAGATTGTAGTAAAACCGATTGGACAGCA
GTTTGCCAACGTCGGGGTAGTGGCCGGTGCCACGATTCTGGGTGATGGTCAGGTCTGTCTGATTCTCGATGGACAGAATG
TTGCCCGCCAGATTCAGGCGACACAGCGTGTCAAACAGCTGAATGATCAGCGTGATGGTTCGCGTAATTCAAATGCACGT
CGTCTGGTGATGATTGTCGATGACTCGGTGACTGTACGTAAAGTGACGTCGCGTCTGCTTGAACGTCAAGGCTATGATAT
TGTCACTGCCAAAGATGGCGTAGATGCGATCGAGCAGCTTGAAAACGTCAGACCGGATCTGATGTTGCTGGATATCGAAA
TGCCGCGCATGGACGGTTTCGAAGTGACCAATCTGGTTCGTCACCATGATATTCACCGTGACTTGCCGATTATCATGATT
ACCTCACGTACCGGTGAGAAGCATCGTGAACGTGCATTCAGCTTAGGCGTAACGCACTATATGGGTAAACCGTTCCAGGA
AGCGGAACTGTTGGCCAATATCCAGCAACTGATTGCTGAAAAACAGAGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

61.335

100

0.626