Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   H0S56_RS02340 Genome accession   NZ_CP059081
Coordinates   493286..494143 (+) Length   285 a.a.
NCBI ID   WP_195726036.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain 12CE1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 488286..499143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS02315 (H0S56_02315) - 488526..489731 (+) 1206 WP_195725572.1 CsgG/HfaB family protein -
  H0S56_RS02320 (H0S56_02320) - 489816..490490 (+) 675 WP_195725573.1 hypothetical protein -
  H0S56_RS02325 (H0S56_02325) - 490800..491375 (-) 576 WP_004732222.1 xanthine phosphoribosyltransferase -
  H0S56_RS02330 (H0S56_02330) - 491464..492177 (-) 714 WP_195725574.1 DUF3108 domain-containing protein -
  H0S56_RS02335 (H0S56_02335) - 492336..493022 (-) 687 WP_005263717.1 hypothetical protein -
  H0S56_RS02340 (H0S56_02340) tonB2 493286..494143 (+) 858 WP_195726036.1 energy transducer TonB Machinery gene
  H0S56_RS02345 (H0S56_02345) ybeY 494328..494810 (-) 483 WP_195726037.1 rRNA maturation RNase YbeY -
  H0S56_RS02350 (H0S56_02350) - 494833..495909 (-) 1077 WP_004281434.1 PhoH family protein -
  H0S56_RS02355 (H0S56_02355) miaB 495947..497404 (-) 1458 WP_191111885.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32695.06 Da        Isoelectric Point: 5.7562

>NTDB_id=467122 H0S56_RS02340 WP_195726036.1 493286..494143(+) (tonB2) [Acinetobacter lwoffii strain 12CE1]
MPLVRTWWKDPVFSSAVLAAGIMHLIVLTLEFGMPQDRDTSTKEIAVSLRQTDEKIEHADFLAQTDQQGSGQFREAHRMS
SDMPSPLMEQHAGEELQESLDMLQQQQELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFREKVEFYGNRYYPEAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHAML
DEAAKSSVRKAAPFGAFDSKMKEISELRVIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=467122 H0S56_RS02340 WP_195726036.1 493286..494143(+) (tonB2) [Acinetobacter lwoffii strain 12CE1]
ATGCCTCTGGTCAGAACTTGGTGGAAAGATCCAGTGTTTAGCAGTGCGGTGCTTGCCGCAGGCATTATGCATTTGATCGT
GCTGACCCTGGAATTTGGTATGCCGCAAGATCGGGATACCAGTACCAAAGAAATCGCAGTCAGTTTGCGCCAGACTGATG
AAAAAATTGAGCATGCTGATTTTCTGGCCCAAACGGACCAGCAGGGTTCCGGCCAGTTTAGAGAAGCTCATCGCATGTCG
AGTGATATGCCATCGCCGTTAATGGAACAACATGCAGGCGAAGAACTGCAAGAAAGTCTGGATATGCTGCAACAGCAACA
GGAACTCAGTTTTGAAGAAAAAGTCCTGATGACCACCTTGAGCTGGCAAAAGCAGGCAGAAGAAAATCAGCGTAAAAAAA
TGCAGGAGCAATTACAGAGCCAATTTCAGGCCAAAGCGGCCATGGTCGCCAGTCTGGAAGCGCAATATTTACAGCGTCAA
CAAAATTTCAGTCGTCAGCAAAAAATTAAGACTGTAGATGGTATTCAGTCCAAGCAGGATGTTTCGGCCGCCTATCTGGA
AAAGTTCCGTGAAAAAGTGGAATTTTATGGTAACCGCTACTATCCGGAAGCAGCCAAGCAGCAGAATCTGGCAGGGGAAG
TGCGGCTGATGGTGATCCTCAATCAGAATGGCGGGATTCGTGCCATTCGACTGATTGACAGTTCAGGACATGCCATGCTG
GATGAAGCAGCTAAATCTTCCGTGCGTAAGGCAGCCCCATTTGGTGCTTTCGACAGTAAAATGAAAGAAATTTCCGAACT
GCGAGTGATTCGTACCTGGCGTTTTGACCCGGCAGAAGCGGAGTTTGAAGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.76

97.895

0.712