Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   H0S56_RS00905 Genome accession   NZ_CP059081
Coordinates   205755..206909 (-) Length   384 a.a.
NCBI ID   WP_195725449.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain 12CE1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 200755..211909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S56_RS00880 (H0S56_00880) - 200906..201505 (-) 600 WP_195725445.1 hypothetical protein -
  H0S56_RS00885 (H0S56_00885) - 201835..202380 (-) 546 WP_195725446.1 glutathione peroxidase -
  H0S56_RS00890 (H0S56_00890) - 202571..203467 (+) 897 WP_195725447.1 DMT family transporter -
  H0S56_RS00895 (H0S56_00895) - 203913..204482 (-) 570 WP_195725448.1 L-threonylcarbamoyladenylate synthase -
  H0S56_RS00900 (H0S56_00900) dprA 204524..205663 (-) 1140 WP_071850174.1 DNA-processing protein DprA Machinery gene
  H0S56_RS00905 (H0S56_00905) tsaP 205755..206909 (-) 1155 WP_195725449.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  H0S56_RS00910 (H0S56_00910) def 207030..207560 (+) 531 WP_004644875.1 peptide deformylase -
  H0S56_RS00915 (H0S56_00915) - 207653..208063 (+) 411 WP_191112935.1 DUF2946 family protein -
  H0S56_RS00920 (H0S56_00920) - 208136..210223 (+) 2088 WP_195725450.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42230.51 Da        Isoelectric Point: 9.0687

>NTDB_id=467109 H0S56_RS00905 WP_195725449.1 205755..206909(-) (tsaP) [Acinetobacter lwoffii strain 12CE1]
MKKVLKGMPFFSALGFKNQMLALAVCVGVSMGTIHSAEAAPARNVNPPALKANAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLLAPDSVQGTPYILGTADQRVLAGKGQKVYARGHGLVVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
GEGDVTTLELTDSYNAEVRRGDRVLPEYDPMLPTLFYPTNAENIAAGGQIVRVLGSIGTAARHSVVTIDRGTVHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQVMVFKTFDQLSYAYVLESELPIKVGANIQPPLLED

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=467109 H0S56_RS00905 WP_195725449.1 205755..206909(-) (tsaP) [Acinetobacter lwoffii strain 12CE1]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTGGCACTTGCCGTTTGTGT
AGGCGTCAGTATGGGGACCATTCATTCTGCCGAGGCAGCACCTGCACGCAACGTCAATCCACCGGCATTAAAAGCCAATG
CACCGAACGTTTATGTGGTGAAAAAAGGCGATACGCTTTGGGACATCTCGAAACGTTTCCTGAAAAATCCGGTACGTTGG
CCGGAAATCTGGGCCAGCAATAAGCACGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGCCTGTTAATGTGCGATTA
CCAGGGCCGTCCAATTATTGGTAAAGACGAAGGTGATGGTTGTGAAGGTATTATCAGCCGCTATCTTGGCAGTACTTCTC
TGCAACCCCAGATTCGGGTTGAATCTTTAAATAATACCATTCCAGTGATTCCGCTTGAGCATATCAAGCAGTGGCTGGAA
CGCTATACCCTTCTGGCACCTGATTCAGTTCAGGGCACACCCTACATTCTCGGAACTGCAGATCAGCGCGTACTGGCTGG
CAAAGGCCAGAAAGTTTATGCACGTGGTCACGGTCTGGTAGTTGGCCAACGCTATGCGGTGTATCGTGAAGCGGAACCGT
ATGTATTTACGGATGCAAACGGCAAGAAATATACGGCTGCACTGGAGCTGCAACAGGTGGCATCTGGTATTGCAGTTCGT
GGCGAAGGTGATGTGACCACACTTGAACTGACAGATAGTTACAATGCTGAAGTACGTCGCGGTGATCGTGTCTTACCTGA
ATACGATCCAATGTTACCGACTCTGTTCTATCCGACCAATGCAGAAAATATTGCTGCCGGTGGTCAGATTGTGCGTGTAT
TGGGGTCAATTGGTACAGCAGCACGTCATAGTGTCGTTACCATTGACCGTGGTACGGTACATGGGGTTCAGACTGGACAT
GTCTTTAGCGTGAATCAAAAAGGTGAAGTGGTAACTGATCCTAAAACCAAAGAACGGGTGCAATTACCGGGCGAGCGTAT
TGGTCAGGTCATGGTATTTAAAACCTTCGATCAATTGAGCTACGCTTATGTGCTGGAAAGTGAATTACCAATCAAGGTTG
GTGCCAACATTCAGCCGCCACTATTAGAAGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.312

100

0.685