Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   H0S57_RS14580 Genome accession   NZ_CP059080
Coordinates   3020352..3021209 (-) Length   285 a.a.
NCBI ID   WP_195729066.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain E10B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3015352..3026209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S57_RS14560 (H0S57_14565) miaB 3016685..3018142 (+) 1458 WP_151836984.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  H0S57_RS14565 (H0S57_14570) - 3018181..3019257 (+) 1077 WP_004977846.1 PhoH family protein -
  H0S57_RS14570 (H0S57_14575) ybeY 3019315..3019794 (+) 480 WP_151836985.1 rRNA maturation RNase YbeY -
  H0S57_RS14575 (H0S57_14580) - 3019896..3020306 (+) 411 WP_151836986.1 hypothetical protein -
  H0S57_RS14580 (H0S57_14585) tonB2 3020352..3021209 (-) 858 WP_195729066.1 energy transducer TonB Machinery gene
  H0S57_RS14585 (H0S57_14590) - 3021470..3022147 (+) 678 WP_004977854.1 hypothetical protein -
  H0S57_RS14590 (H0S57_14595) - 3022303..3023013 (+) 711 WP_078426185.1 DUF3108 domain-containing protein -
  H0S57_RS14595 (H0S57_14600) - 3023104..3023679 (+) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  H0S57_RS14600 (H0S57_14605) - 3023956..3024702 (-) 747 WP_064537862.1 IS5-like element ISAba31 family transposase -
  H0S57_RS14605 (H0S57_14610) - 3024821..3025873 (+) 1053 WP_171500552.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32594.12 Da        Isoelectric Point: 6.7725

>NTDB_id=467097 H0S57_RS14580 WP_195729066.1 3020352..3021209(-) (tonB2) [Acinetobacter johnsonii strain E10B]
MPLAHDWWKDPIFTATVVLAVFLHLVILTLQFAMPQENDASVKEIAVTLRPSDKKIENADFLAQADQQGAGTFRESHRMS
SDMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSHFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGVQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=467097 H0S57_RS14580 WP_195729066.1 3020352..3021209(-) (tonB2) [Acinetobacter johnsonii strain E10B]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTCGTGCTGGCGGTATTTTTGCATCTCGTGAT
TTTGACTTTGCAATTTGCTATGCCTCAAGAAAATGATGCGTCAGTGAAAGAAATTGCTGTTACCTTGCGTCCTTCTGATA
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAGGGGGCAGGGACCTTTCGTGAGTCACATCGCATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAACAGCAGCGTGAAACTTTAGAACAGATCCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAGCTGTTAATGACGACCTTAAGTTGGCAAAAACAAGCTGAGGATAATCAGCGCAAAAAAG
CCATGGAAGAAATGAATAGCCATTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTACAGCGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATCAAAACAGTTGATGGTGTTCAAGCCAAGCAAGATATTTCGGCAGCCTATCTTGA
AAAGTTCCGTCAGAAAGTGGAATTTTATGGCAACCGTTACTATCCAGAAGCAGCTAAACAACAACGACTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGCATCAGGAGGCATCCGCGCCATTCGCTTGATTGATAGTTCAGGTCATGAGATGCTC
GATGAGGCTGCAAAAGCCTCGGTACGTAAAGCTGCACCATTTGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGACCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.571

98.246

0.723