Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   H0S57_RS04860 Genome accession   NZ_CP059080
Coordinates   1040184..1044662 (+) Length   1492 a.a.
NCBI ID   WP_195728769.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain E10B     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 1035184..1049662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S57_RS04835 (H0S57_04835) - 1035655..1036293 (-) 639 WP_087010454.1 hypothetical protein -
  H0S57_RS04840 (H0S57_04840) pilG 1036574..1036957 (+) 384 WP_004694493.1 twitching motility response regulator PilG Regulator
  H0S57_RS04845 (H0S57_04845) - 1036985..1037353 (+) 369 WP_004694491.1 response regulator -
  H0S57_RS04850 (H0S57_04850) - 1037359..1037895 (+) 537 WP_004694490.1 chemotaxis protein CheW -
  H0S57_RS04855 (H0S57_04855) - 1037946..1040018 (+) 2073 WP_195728768.1 methyl-accepting chemotaxis protein -
  H0S57_RS04860 (H0S57_04860) chpA 1040184..1044662 (+) 4479 WP_195728769.1 Hpt domain-containing protein Regulator
  H0S57_RS04865 (H0S57_04865) - 1044667..1045122 (+) 456 WP_125273962.1 hypothetical protein -
  H0S57_RS04870 (H0S57_04870) dapE 1045188..1046321 (-) 1134 WP_195728770.1 succinyl-diaminopimelate desuccinylase -
  H0S57_RS04875 (H0S57_04875) - 1046438..1046554 (-) 117 WP_373868118.1 entericidin A/B family lipoprotein -
  H0S57_RS04880 (H0S57_04880) - 1046742..1047620 (-) 879 WP_195728772.1 DUF1853 family protein -
  H0S57_RS04885 (H0S57_04885) - 1047718..1048110 (+) 393 WP_195728773.1 YbaN family protein -
  H0S57_RS04890 (H0S57_04890) elsL 1048110..1048613 (+) 504 WP_087010468.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1492 a.a.        Molecular weight: 166656.18 Da        Isoelectric Point: 4.3884

>NTDB_id=467086 H0S57_RS04860 WP_195728769.1 1040184..1044662(+) (chpA) [Acinetobacter johnsonii strain E10B]
MKEILKHLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELDPLFEKWYAEPIHQETLLSIRRHFHTLKGSGRMVGAKSA
GETAWAVEDTLNRVISGAVPLTATVQKFAKTVFKLYQFKLYPTFKAVQEIDLDLRPLVLIGQQLQQNQSLEPALEELLQL
SNHLNSNDVVTGLELSDIEVAESEPQVADVSEQDDQVHDVLEETLAIFIEEAEDHLATIDQFLNADETKVQDYNGLIRAL
HTLRGSSSMAQIEHVFNASSKVENLFKTLVQEEIVSTSKEISLLTQYAEFVRDYLHVLGRGTNEQLDVIYATFTTAWDNY
GFSIEDVDDELNPQGMVSKLIELNIDLLLDAEFEFDQRAKAEYPDYIQHLGEQAKQLLEFTNNRAAQGIHDFTSELYAGY
QALLEKPELLNVDYAYELFGQAHQEFIHLFDTLAAGQRVILTEEVHKVLNELMAFVQQDVESTSTTVIEPVAEAIVSGNT
LQPSLDLAQISQQIASDHQYKQSNTANTDFDDDLLDIFLEEAEELLMGMDQDLNTWSKNGNDTAALNNLMRYLHTLKGGA
NMISAPFIGSIAHELESIYERVIRQQIATTPQLISIIRLVQDDVADRIQVIRTEKVDYPATATIKVLHNIQSLVEGTTVT
TTVSEPLVEAFVAAVEEPLSNIDRTIEAEAAAVESATAIEEPSVVDNTDVTVVEQLDTPSLVQEEAVSAVEEAASLLSIV
EETFLEEAEEILATTDGLLKQWTEQRSDRSVLLQLQRAAHSLKGGARMAENEPVGAIAYELETTFEQFAVHNFSSNVYDP
LLQTAFEWLKQAIFKRDFSNYDGLKNSLASIDYVDVIAQLPTRVTQIDLLNAVPSFEFVQGDGTEPPAMLGEWKETTHLD
GGNEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSENSRYADF
DPLEMDQYSSLNQLSKSLAESASDLVDFKSTLAEKIRDAEGLLLQQSRIQAEIQESLMRTRLVPFSRMLPRLQRIVRQTA
STLNRPTELVVHNTEGELDRTILERLVTPFEHMLRNAIDHGIEDTEQRSAAKKSATGQIELNISRQGTDVIVSFKDDGKG
IDESTIKAKALNLGLIKADQVLDKQEILQFIFHPGFSTAKEVTQISGRGVGLDVVQSEIKALGGHVTVESEIGFGTTFII
RVPTTVAVSDALMVKAGDQQYAIPLAQIDRIVRIAPTALDHYFHSKDDQFKIDGVSYKLRYLSEFLSNQPIPRLSNIGHS
LPVLLIKGNSGQTIALLVDQLIGSRAQIVVKPVGQQFASIGAIAGATILGNGHVCLILDGQNIARQILSTKRVTHAVDHR
DFGRHQDTRRLVMIVDDSVTVRKVTSRLLERQGFDIVTAKDGVDAMEQLESVKPDLMLLDIEMPRMDGFEVTNLVRHHEI
HQNLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLLAEKQG

Nucleotide


Download         Length: 4479 bp        

>NTDB_id=467086 H0S57_RS04860 WP_195728769.1 1040184..1044662(+) (chpA) [Acinetobacter johnsonii strain E10B]
ATGAAAGAAATATTAAAACATTTAGTTGAAACGACAACGCTTCCGGAAGATAGTTATCTAGATCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAAGAAATTGAAGAAATCTTCGTTGAGTTAGATCCATTATTTGAAAAGTGGTACGCTGAACCGATCC
ATCAAGAAACTTTGTTGAGCATACGTCGTCACTTCCATACCTTAAAAGGCTCTGGTCGTATGGTGGGGGCAAAGTCAGCA
GGTGAAACAGCGTGGGCAGTTGAAGACACCTTAAATCGTGTGATTTCAGGGGCTGTACCGCTCACAGCAACGGTTCAAAA
ATTTGCTAAGACAGTATTTAAACTGTATCAATTTAAACTGTATCCGACTTTTAAAGCGGTGCAGGAAATTGATCTTGATC
TTCGTCCATTGGTTTTAATTGGACAACAATTACAACAAAATCAAAGTTTAGAACCTGCTCTAGAAGAGTTGCTACAACTG
TCTAATCATCTAAATAGTAATGATGTCGTGACGGGACTAGAGCTGAGCGATATCGAAGTGGCTGAATCTGAGCCACAAGT
TGCAGACGTTTCTGAGCAGGATGATCAAGTGCATGATGTCCTTGAAGAAACTTTAGCGATCTTCATTGAAGAAGCGGAAG
ACCATTTAGCGACTATCGATCAGTTCTTAAATGCAGATGAAACCAAAGTACAAGATTACAATGGTTTAATCCGTGCTTTA
CATACATTGCGCGGTAGTTCGTCTATGGCGCAAATTGAGCATGTCTTTAATGCCAGCTCAAAAGTCGAAAATCTATTTAA
AACCTTGGTACAAGAAGAGATCGTTTCTACCTCGAAGGAAATCTCTTTACTCACCCAATATGCTGAATTTGTACGTGACT
ATTTACATGTGCTTGGGCGTGGTACGAACGAACAGCTTGATGTAATTTATGCCACGTTTACTACAGCTTGGGATAACTAT
GGTTTCAGTATAGAAGACGTAGACGATGAACTGAACCCACAAGGTATGGTCTCGAAGCTGATCGAGTTAAATATTGATCT
GTTGCTTGATGCCGAGTTTGAGTTTGATCAGCGGGCTAAAGCTGAATATCCAGACTATATTCAGCACTTAGGTGAACAAG
CAAAACAATTGTTAGAATTCACCAATAACCGTGCTGCTCAAGGAATTCATGATTTTACTTCTGAGCTATACGCGGGTTAT
CAAGCCTTACTGGAAAAGCCAGAATTACTCAATGTAGATTATGCATACGAGTTATTTGGTCAGGCACATCAAGAATTTAT
CCATTTATTTGACACTTTAGCTGCGGGTCAGCGCGTCATTCTGACTGAAGAAGTGCATAAAGTTCTGAATGAATTAATGG
CCTTCGTACAGCAAGATGTTGAATCGACTTCGACGACGGTAATTGAACCTGTTGCTGAGGCTATTGTTTCTGGAAATACT
TTACAACCAAGCCTTGATCTTGCGCAGATTTCGCAGCAAATTGCATCGGATCATCAGTACAAGCAATCGAATACGGCCAA
TACCGATTTTGATGATGATTTGCTCGATATCTTCTTGGAAGAAGCCGAAGAATTATTGATGGGGATGGATCAGGATCTCA
ATACTTGGTCTAAAAATGGCAATGATACCGCGGCACTCAATAATTTAATGCGTTATTTGCACACCTTAAAAGGTGGTGCC
AATATGATTTCTGCACCTTTTATTGGTTCGATTGCACACGAATTAGAGTCTATTTATGAACGTGTGATTCGTCAGCAAAT
TGCCACAACGCCACAGTTGATCAGCATCATACGTTTAGTACAGGATGACGTCGCAGACCGAATTCAGGTCATTCGCACCG
AGAAGGTTGATTATCCAGCAACAGCAACCATCAAGGTACTGCATAACATTCAGAGCTTAGTTGAGGGTACGACTGTTACA
ACTACAGTATCCGAGCCTTTAGTTGAAGCGTTTGTTGCGGCAGTTGAAGAACCTTTATCTAATATAGATAGAACGATTGA
AGCTGAGGCAGCTGCGGTTGAGTCAGCAACTGCGATTGAAGAGCCGAGTGTAGTTGATAACACTGACGTTACTGTCGTTG
AACAGCTGGATACTCCGTCACTTGTCCAAGAAGAAGCAGTCAGCGCTGTTGAAGAAGCAGCTAGTCTTTTATCAATTGTT
GAAGAAACCTTCTTGGAAGAAGCTGAAGAAATTTTAGCGACTACGGATGGCTTACTGAAACAGTGGACTGAACAACGAAG
TGACCGTAGTGTGTTACTACAATTGCAACGTGCCGCGCACAGCTTAAAAGGCGGCGCGCGTATGGCGGAGAATGAACCCG
TTGGTGCGATTGCTTATGAACTAGAAACCACATTTGAGCAATTTGCTGTACATAATTTCAGTTCAAACGTGTATGACCCA
TTATTGCAAACCGCATTTGAATGGTTAAAACAAGCCATCTTCAAACGTGATTTTAGTAATTATGATGGTTTGAAAAATAG
CTTAGCATCTATTGATTATGTGGATGTGATTGCGCAATTACCGACGCGTGTAACTCAAATTGATTTACTCAATGCGGTAC
CAAGTTTTGAGTTTGTGCAAGGTGATGGTACTGAGCCGCCAGCAATGCTGGGTGAGTGGAAAGAAACGACTCACTTGGAT
GGCGGTAATGAGATGATTCGTATCTCAGCTGATTTGGTTGAAAAAATGATCGACCTATCAGGTGAAAATGCAATTAACCG
TTCGCGTATCGAGATGGACTTAGGTCAACTCGGTAATACTTTGAACGAGATGGAGCTTGCAATTAAGCGTTTGGCGGATC
AGTTACGTCGAATGGAAGGAGAGCTTGAAAGTCAAATTATTGCGAAGCACGGTTCTGAAAACTCGCGCTACGCAGACTTT
GACCCCTTGGAAATGGACCAATATTCATCGCTGAATCAATTGTCTAAATCCTTAGCCGAATCAGCTTCGGATTTGGTCGA
CTTTAAGAGCACTTTGGCTGAGAAAATTCGTGATGCGGAAGGCTTGTTATTACAACAATCCCGTATTCAAGCGGAAATTC
AAGAAAGCTTAATGCGGACACGTTTAGTGCCGTTCTCCCGTATGTTGCCGCGTTTGCAGCGTATTGTACGTCAGACTGCA
TCAACCTTGAACCGTCCGACAGAACTGGTCGTCCATAACACCGAAGGTGAATTGGACCGTACGATTCTTGAACGTTTGGT
TACACCGTTTGAGCATATGCTACGTAATGCAATCGACCACGGTATTGAAGATACGGAACAACGTAGTGCTGCGAAAAAAT
CAGCGACAGGTCAAATTGAACTGAACATTAGTCGTCAAGGTACAGATGTTATCGTCAGCTTTAAAGATGATGGTAAGGGT
ATTGATGAAAGCACGATTAAAGCGAAAGCGCTAAATTTAGGTTTAATTAAAGCCGATCAAGTACTAGATAAACAGGAAAT
TTTACAGTTTATTTTCCATCCAGGTTTTAGTACGGCCAAAGAAGTGACGCAAATTTCTGGACGTGGTGTTGGTCTTGATG
TGGTGCAAAGTGAAATTAAAGCACTGGGTGGACATGTCACAGTTGAATCGGAAATTGGATTCGGCACAACCTTCATTATT
CGCGTACCGACTACGGTAGCGGTGAGTGATGCCTTGATGGTAAAAGCCGGTGATCAACAATATGCGATTCCATTGGCGCA
GATTGATCGTATTGTGCGTATTGCTCCAACAGCACTGGATCACTATTTCCACAGCAAAGATGACCAATTCAAAATTGATG
GTGTGAGTTATAAACTGCGCTATTTATCTGAGTTTTTATCCAATCAGCCGATTCCGCGTTTGAGTAATATTGGACATTCA
TTGCCGGTATTATTGATTAAAGGCAATAGTGGACAAACCATTGCCTTATTGGTCGATCAGTTGATTGGTTCACGTGCGCA
AATTGTAGTGAAGCCGGTTGGACAACAGTTTGCCAGCATTGGTGCAATTGCTGGTGCAACGATTTTGGGTAATGGACATG
TGTGTTTGATTTTAGATGGTCAGAACATTGCACGTCAGATTTTAAGTACCAAGCGTGTGACGCATGCAGTTGATCACCGT
GACTTTGGTCGCCATCAGGATACACGTCGTTTAGTGATGATTGTGGATGACTCGGTCACGGTACGTAAGGTGACATCGCG
CTTATTAGAGCGTCAAGGCTTTGATATTGTGACAGCAAAAGACGGTGTCGATGCGATGGAACAGCTTGAGAGCGTTAAAC
CAGACCTGATGTTGCTGGATATTGAAATGCCACGTATGGATGGTTTCGAAGTAACGAACTTGGTTCGTCACCACGAAATT
CACCAGAACTTGCCGATTATTATGATTACATCGCGTACGGGTGAAAAACACCGTGAACGTGCTTTCAGCTTGGGCGTGAC
ACACTACATGGGCAAACCATTCCAAGAGGCAGAATTACTTGCCAACATTCAGCAACTATTGGCTGAAAAGCAGGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.818

100

0.618