Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   H0S57_RS02065 Genome accession   NZ_CP059080
Coordinates   459297..461519 (-) Length   740 a.a.
NCBI ID   WP_195728546.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain E10B     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 454297..466519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S57_RS02040 (H0S57_02040) - 454330..454686 (-) 357 WP_004978810.1 chaperone modulator CbpM -
  H0S57_RS02045 (H0S57_02045) - 454697..455650 (-) 954 WP_151835671.1 DnaJ C-terminal domain-containing protein -
  H0S57_RS02050 (H0S57_02050) - 455795..456247 (-) 453 WP_151835670.1 DUF2147 domain-containing protein -
  H0S57_RS02055 (H0S57_02055) - 456447..457322 (-) 876 WP_151835669.1 Hsp33 family molecular chaperone HslO -
  H0S57_RS02060 (H0S57_02060) - 457373..459214 (-) 1842 WP_151835668.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  H0S57_RS02065 (H0S57_02065) priA 459297..461519 (-) 2223 WP_195728546.1 primosomal protein N' Machinery gene
  H0S57_RS02070 (H0S57_02070) gspF 461672..462877 (+) 1206 WP_151835666.1 type II secretion system inner membrane protein GspF -
  H0S57_RS02075 (H0S57_02075) gspG 462911..463348 (+) 438 WP_010325797.1 type II secretion system major pseudopilin GspG -
  H0S57_RS02080 (H0S57_02080) - 463632..463967 (+) 336 WP_004978824.1 hypothetical protein -
  H0S57_RS02085 (H0S57_02085) - 464128..464466 (+) 339 WP_151837223.1 tRNA-binding protein -
  H0S57_RS02090 (H0S57_02090) lnt 464533..466092 (-) 1560 WP_151837222.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84112.92 Da        Isoelectric Point: 8.6017

>NTDB_id=467078 H0S57_RS02065 WP_195728546.1 459297..461519(-) (priA) [Acinetobacter johnsonii strain E10B]
MPENTLSTTPSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDNAILDAKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKQITQCILEAQDFKPQAMTLAQMPLTPNDEQKPAIQNILKARHSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGKASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
HMPEHCPQCQHSELKPIGLGTAKVEENLQELFPNFDVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQSFLQEHAQALRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQNV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=467078 H0S57_RS02065 WP_195728546.1 459297..461519(-) (priA) [Acinetobacter johnsonii strain E10B]
ATGCCAGAAAATACACTTTCCACCACACCAAGCTACCGTATCCGCGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAACTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTCAAGGCAATAACTGAGTTGCTC
GATGACAACGCTATTCTAGATGCTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCGATTGGTGA
AGTGATGCATGCCGCTTTGCCCAGCTTTTTACGCCAAGGTAAACCTTATAATTTACTAGCGCGGATGTGGAAGCTGATTG
ATGATCATGCCGAAGACAAATTAAAGCGTTCTGAAAAACAACAAGATGCCTATAAAATTTTAAAGCTGCATCCCACCGGA
ACTTCTGAAAACATTCTAAATTTGGCTGGCATTGAAACAGCGACCTTAAAAGCCTTAGAAAAAAAGCAAATCACCCAGTG
CATACTTGAAGCCCAAGACTTTAAACCGCAAGCCATGACACTGGCGCAAATGCCCCTCACGCCCAATGATGAACAAAAGC
CTGCCATTCAAAACATTCTCAAAGCTCGTCATAGCTACCATGCTTTCTTACTGGATGGTTTAACTGGTAGTGGCAAAACT
GAAGTCTATTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTCTTGGTATTAGTGCCTGAAATTGGTCTCAC
CCCACAAACAGTGAGCCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTTCAAGCCTGGCAAAGCGCACAAACGGGCAAAGCCTCGATTGTGATTGGCACACGTTCTGCCATCTATACCCCCCTT
CCGCATTTGGGTTTGATTGTCTTAGATGAAGAGCATGACTTATCTTTCAAGCAACAAGAGGGCTTCCGTTACCATGCTCG
TGATGTGGCTTTATACCGTGCACACTTAGAAAACTGTCCGATTATCCTCGGTTCTGCAACGCCAAGTATCGACAGTTATG
CATTGGTTGAACAAGGTAAAATGACCCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATCGATCTGAAAGTAGCACAAAAACAAAATGGCATCAGCCAACAGCTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTCTTAAATCGTCGCGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCCAAGT
GCCCCCACTGCGATGCCAATTTTACCGTGCATCGACAGCCCTATCAGCATCTCCACTGTCACCACTGCGGCACCATCCAC
CACATGCCTGAACATTGTCCGCAATGTCAGCATAGCGAACTGAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGAACTGTTCCCCAACTTTGACGTAATTCGGGTTGATCGTGACTCGACCAGTCGGGTCGGCAGCTGGCAAAAAA
TCTATAACAAGATTCAGAAAAGTGAACCCATCATTTTGCTCGGCACCCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTGGTGGCGATTTTAGACATTGACTCAGGCTTACTCAGTGTTGACTTTCGTGCCACAGAACGTACTGCACAGCT
CATCATCCAAGTCGCTGGACGTGCTGGGCGTGGCGAGAAAAAAGGCGAAGTCTATTTACAAACTCTACGTCCAGATCATC
CTTTGCTGAATACCCTGCTGGAATCGGGCTATCGCAGCTTTGCCAAGCAAACGTTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGACCAAGAACTGAACCAAAGCTTTTTACAAGAGCATGC
ACAAGCACTGCGCCAAGCCTCCGAAAACAGTATTGATATTTGGGGGCCAATTCCTGCGCCGATGGAACGTAAAGCAGGCC
GCTATCAAGCGCATATGGTACTACTGTCCAAAGACCGTGCGCGGATGCATTTTTACATTCGTCAGTGGTGGCAAAATGTC
TGGCACAACAAACCGCATGGTATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

DEAD/DEAH box helicase (DEAD)

(210-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.956

98.784

0.711