Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   H0S57_RS01525 Genome accession   NZ_CP059080
Coordinates   343032..343355 (+) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter johnsonii strain E10B     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 338032..348355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S57_RS01490 (H0S57_01490) - 338676..339455 (+) 780 WP_151835719.1 uroporphyrinogen-III synthase -
  H0S57_RS01495 (H0S57_01495) - 339452..340294 (+) 843 WP_151835718.1 hypothetical protein -
  H0S57_RS01500 (H0S57_01500) - 340299..341492 (+) 1194 WP_151835717.1 heme biosynthesis protein HemY -
  H0S57_RS01505 (H0S57_01505) - 341500..341682 (+) 183 Protein_288 acyl-CoA thioesterase -
  H0S57_RS01510 (H0S57_01510) - 341711..342103 (-) 393 Protein_289 transposase family protein -
  H0S57_RS01515 (H0S57_01515) - 342141..342545 (-) 405 WP_099475598.1 transposase family protein -
  H0S57_RS01520 (H0S57_01520) - 342635..342880 (+) 246 Protein_291 acyl-CoA thioesterase -
  H0S57_RS01525 (H0S57_01525) hns 343032..343355 (+) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator
  H0S57_RS01530 (H0S57_01530) gspN 343553..344263 (+) 711 WP_151835749.1 type II secretion system protein N -
  H0S57_RS01535 (H0S57_01535) - 344263..345087 (+) 825 WP_151835715.1 type II secretion system protein N -
  H0S57_RS01540 (H0S57_01540) gspD 345127..347487 (+) 2361 WP_151835714.1 type II secretion system secretin GspD -
  H0S57_RS01545 (H0S57_01545) - 347575..348318 (+) 744 WP_151835713.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=467074 H0S57_RS01525 WP_004692786.1 343032..343355(+) (hns) [Acinetobacter johnsonii strain E10B]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=467074 H0S57_RS01525 WP_004692786.1 343032..343355(+) (hns) [Acinetobacter johnsonii strain E10B]
ATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACCCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGCATTGAGCAAATTTTAG
AGTTTGGCGCGACTAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTAGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTCTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86