Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   H0S58_RS12020 Genome accession   NZ_CP059079
Coordinates   2568109..2570331 (+) Length   740 a.a.
NCBI ID   WP_195726636.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2563109..2575331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS11995 (H0S58_12000) - 2563176..2564015 (+) 840 WP_053578895.1 HlyC/CorC family transporter -
  H0S58_RS12000 (H0S58_12005) lnt 2564012..2565571 (+) 1560 WP_195726632.1 apolipoprotein N-acyltransferase -
  H0S58_RS12005 (H0S58_12010) - 2565661..2565996 (-) 336 WP_195726633.1 hypothetical protein -
  H0S58_RS12010 (H0S58_12015) gspG 2566275..2566712 (-) 438 WP_195726634.1 type II secretion system major pseudopilin GspG -
  H0S58_RS12015 (H0S58_12020) gspF 2566752..2567957 (-) 1206 WP_195726635.1 type II secretion system inner membrane protein GspF -
  H0S58_RS12020 (H0S58_12025) priA 2568109..2570331 (+) 2223 WP_195726636.1 primosomal protein N' Machinery gene
  H0S58_RS12025 (H0S58_12030) - 2570391..2572229 (+) 1839 WP_195726637.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  H0S58_RS12030 (H0S58_12035) - 2572280..2573155 (+) 876 WP_195726638.1 Hsp33 family molecular chaperone HslO -
  H0S58_RS12035 (H0S58_12040) - 2573601..2574545 (+) 945 WP_092720490.1 sensor domain-containing diguanylate cyclase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84049.24 Da        Isoelectric Point: 9.2968

>NTDB_id=467054 H0S58_RS12020 WP_195726636.1 2568109..2570331(+) (priA) [Acinetobacter sp. TTH0-4 strain 1BD1]
MPNSTSTLSSIYRIRVAVPVPVYDCFDYMLSAEQYQQAEVGARVAVSFGRQNLIGIIIEKLSNDTPIDPRFKLKAISELL
DEQAILDAKILSLLTWSAQYYQFPIGEVFQSALPAFLRQGKPYNLLARIWKVLDLNAEAKVTRSEKQQNAYKILKLHPSG
TTENILNLAGIETATLKALEKKVIIECVLENQDFRPQSVTLAQLPLTPNQDQKKAIQHILKTQNKYQAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHGHIVLLHSGLNDSKRLQAWQSAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVAMYRAHLHSCPIILGSATPSIESYALVSSGKMTNLELNQRAGVALMPKIHL
IDLKIAQKQNGVSQTLIDEIQKRLDKKEQVLVFLNRRGYAPVLICESCAWQAKCPHCDANFTVHRQPYQYLHCHHCGSIH
RMPEHCPQCKHTELKSIGMGTAKVEEHLQQLFPKFDVIRVDRDSTSRIGSWQKIYDKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEHKGEVYLQTLRPDHPLLNTLIHKDYRHFAHQTLKERQAALL
PPFRYAVLIRCESKSQEQNQEFLQQHAQVLKHGSENLIDIWGPIPAPMERKAGRYQAHMVLLSVDRARLHFYIRAWWQNM
LHQKPSTMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=467054 H0S58_RS12020 WP_195726636.1 2568109..2570331(+) (priA) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGCCAAATTCAACCTCGACTTTATCCAGTATTTATCGCATTCGTGTCGCAGTGCCAGTACCTGTCTATGACTGCTTTGA
CTACATGCTCAGCGCAGAACAATATCAGCAGGCAGAAGTAGGTGCACGTGTTGCTGTCTCATTTGGACGTCAAAATCTGA
TCGGTATTATTATTGAAAAATTAAGCAACGACACTCCTATCGACCCACGCTTTAAACTTAAAGCGATTAGCGAATTGCTG
GATGAACAGGCTATTTTAGATGCAAAAATTTTAAGTTTATTAACGTGGTCAGCACAATATTATCAATTCCCGATAGGTGA
AGTTTTTCAAAGTGCCTTACCTGCTTTTTTACGTCAGGGTAAACCGTATAATTTATTGGCACGCATCTGGAAGGTTTTGG
ACTTAAATGCTGAAGCCAAAGTAACACGTTCAGAAAAACAACAAAATGCCTATAAAATTCTGAAATTACACCCATCAGGC
ACCACAGAGAATATTTTAAATTTAGCAGGTATTGAAACTGCCACGCTGAAAGCTTTAGAAAAAAAAGTTATTATTGAATG
TGTCTTGGAAAATCAAGATTTTCGGCCCCAGTCCGTGACATTGGCTCAATTGCCATTGACCCCCAATCAAGATCAAAAGA
AAGCCATTCAACACATTCTAAAAACACAAAATAAATATCAGGCTTTTTTACTGGATGGCTTAACTGGCAGTGGTAAAACC
GAAGTCTATTTACAAGTCATGCAAGAAGTTCTGAAACAAGGCAAACAGGTTTTGGTTTTAGTGCCCGAAATTGGACTGAC
CCCACAAACCATTAGCCGTTTTCAGTCGCGCTTCCATGGCCATATTGTACTGTTACATTCAGGACTGAATGACTCAAAAC
GTTTACAAGCTTGGCAGTCAGCACAGACAGGCAAAGCTTCCATTATTTTGGGAACACGTTCAGCTATTTATACCCCATTG
CCTAATTTGGGATTAATTATTTTAGATGAAGAGCATGATCTGTCTTTTAAACAACAAGAGGGTTTTCGCTATCATGCGCG
CGATGTAGCAATGTATCGTGCACACTTACACAGTTGCCCCATTATTTTAGGTTCAGCCACACCGAGTATTGAAAGTTATG
CGCTGGTCAGTTCGGGCAAAATGACCAACTTAGAATTGAATCAGCGCGCAGGTGTTGCGCTCATGCCAAAAATTCATTTA
ATTGATTTGAAAATTGCGCAAAAACAAAACGGCGTGAGTCAAACCTTAATTGATGAAATTCAAAAACGTTTAGATAAAAA
AGAACAAGTCTTGGTGTTTTTAAATCGACGGGGTTATGCACCTGTGTTGATTTGTGAGAGTTGTGCATGGCAAGCCAAAT
GCCCACATTGCGATGCTAATTTTACGGTACACCGTCAACCTTACCAGTATTTACATTGTCATCATTGTGGCAGTATTCAT
CGTATGCCAGAGCATTGCCCACAATGTAAGCATACTGAGCTCAAATCAATTGGCATGGGAACAGCCAAGGTTGAAGAACA
CTTACAACAGTTATTTCCAAAATTTGATGTCATTCGCGTAGATCGTGACTCCACCAGCCGTATTGGAAGTTGGCAAAAAA
TTTATGACAAAATTCAAAAAAGTGAACCCATTATTTTACTGGGAACTCAAATGCTGGCCAAAGGTCACCATTTTCCATAC
GTGACTTTGGTGGCGATTCTGGATATTGATTCAGGTTTACTCAGTGTCGATTTTCGTGCCACCGAACGTACAGCACAACT
GATTATACAAGTCGCAGGTCGTGCAGGACGTGGGGAACATAAAGGTGAAGTGTATTTACAGACCTTAAGACCAGATCATC
CATTACTGAATACTTTAATTCACAAAGATTACCGTCATTTTGCTCACCAAACTTTAAAAGAACGGCAAGCTGCACTTTTA
CCGCCTTTTCGATATGCGGTCCTCATTCGTTGCGAGTCTAAAAGTCAGGAACAAAATCAAGAATTTTTACAACAACACGC
TCAAGTGTTAAAACATGGTTCTGAAAATCTAATTGATATTTGGGGGCCTATTCCAGCCCCGATGGAACGTAAAGCGGGTC
GTTATCAGGCGCATATGGTGCTGTTATCCGTAGATCGTGCCCGATTACATTTTTATATTCGGGCTTGGTGGCAAAATATG
TTGCATCAAAAGCCATCAACCATGAAACTGACCCTAGATATAGACCCTCAGGAATTGAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.207

99.189

0.716