Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   H0S58_RS11415 Genome accession   NZ_CP059079
Coordinates   2448022..2448768 (-) Length   248 a.a.
NCBI ID   WP_227592280.1    Uniprot ID   -
Organism   Acinetobacter sp. TTH0-4 strain 1BD1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2443022..2453768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0S58_RS11395 (H0S58_11400) - 2444073..2444774 (-) 702 WP_053578780.1 YfgM family protein -
  H0S58_RS11400 (H0S58_11405) hisS 2444803..2446098 (-) 1296 WP_195726567.1 histidine--tRNA ligase -
  H0S58_RS11405 (H0S58_11410) ispG 2446106..2447221 (-) 1116 WP_053578782.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  H0S58_RS11410 (H0S58_11415) - 2447246..2448031 (-) 786 WP_092718299.1 helix-turn-helix domain-containing protein -
  H0S58_RS11415 (H0S58_11420) pilF 2448022..2448768 (-) 747 WP_227592280.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  H0S58_RS11420 (H0S58_11425) rlmN 2448845..2450080 (-) 1236 WP_053578785.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  H0S58_RS11425 (H0S58_11430) ndk 2450203..2450634 (-) 432 WP_053578786.1 nucleoside-diphosphate kinase -
  H0S58_RS11430 (H0S58_11435) iscX 2450744..2450944 (-) 201 WP_053578787.1 Fe-S cluster assembly protein IscX -
  H0S58_RS11435 (H0S58_11440) - 2451035..2451586 (-) 552 WP_195727614.1 phosphatase PAP2 family protein -
  H0S58_RS11440 (H0S58_11445) - 2451617..2452900 (-) 1284 WP_195726569.1 glycosyltransferase family 4 protein -
  H0S58_RS11445 (H0S58_11450) - 2453091..2453507 (-) 417 WP_053578790.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 27939.62 Da        Isoelectric Point: 9.2475

>NTDB_id=467052 H0S58_RS11415 WP_227592280.1 2448022..2448768(-) (pilF) [Acinetobacter sp. TTH0-4 strain 1BD1]
MAACQTQSTLGKKDPEKAIQVRTQLAAEYIKTGDLDSAKRALDQALEIESRDSAANMMMGILLQQEGSKVSMDKADAYFK
RAISADPKNAQARNNYGTYLYQTERYNEAIEQLNVAGTTLGYDQRFRALENVGRIYLKIGDGANAEKSFKQALQANRDSY
ISMLELSEIFYLKQQTAAATQLYEQFARGVGQKNQGARALWIGIRIARANSDKMGMQVLVNQLRALFPESPEYQRYLQLQ
YSTEAVWK

Nucleotide


Download         Length: 747 bp        

>NTDB_id=467052 H0S58_RS11415 WP_227592280.1 2448022..2448768(-) (pilF) [Acinetobacter sp. TTH0-4 strain 1BD1]
ATGGCTGCTTGTCAAACTCAAAGTACATTAGGCAAAAAAGATCCTGAAAAAGCCATTCAGGTTCGAACTCAGTTGGCAGC
CGAATATATTAAAACAGGTGATTTAGATTCCGCAAAGCGGGCTTTAGATCAGGCACTCGAAATTGAGTCGAGAGATTCAG
CCGCAAATATGATGATGGGGATTTTACTGCAACAAGAAGGCAGTAAAGTGAGTATGGATAAAGCAGATGCTTATTTTAAG
CGTGCAATTTCTGCAGACCCCAAAAATGCACAAGCTCGTAACAACTATGGTACTTATTTGTATCAAACTGAACGCTATAA
TGAAGCGATTGAACAACTGAATGTTGCAGGCACAACACTAGGTTATGATCAGCGCTTTCGAGCTTTGGAAAATGTCGGTC
GGATTTATTTAAAAATAGGCGATGGTGCGAATGCTGAAAAATCATTCAAACAAGCTTTACAAGCCAATCGTGATTCTTAT
ATTTCAATGTTAGAGTTGTCAGAGATTTTTTATTTGAAACAACAGACCGCTGCTGCGACACAGCTGTATGAACAGTTTGC
GCGCGGGGTGGGTCAGAAAAATCAAGGTGCGCGGGCTCTTTGGATTGGTATCCGAATTGCACGGGCAAATAGTGACAAAA
TGGGTATGCAGGTACTTGTCAATCAATTGCGTGCATTATTCCCAGAGAGTCCAGAATACCAACGTTATCTGCAATTACAG
TACAGTACTGAGGCCGTATGGAAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(133-186)

Tetratricopeptide repeat (TPR_19)

(73-128)

Tetratricopeptide repeat (TPR_8)

(21-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

79.757

99.597

0.794
  pilF Acinetobacter baylyi ADP1

71.371

100

0.714