Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPKB_RS00210 Genome accession   NC_017354
Coordinates   40726..42039 (+) Length   437 a.a.
NCBI ID   WP_000653539.1    Uniprot ID   -
Organism   Helicobacter pylori 52     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 35726..47039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPKB_RS07690 - 35735..35959 (+) 225 Protein_33 restriction endonuclease -
  HPKB_RS00190 (HPKB_0037) crdR 36046..36687 (+) 642 WP_001169802.1 copper response regulator transcription factor CrdR -
  HPKB_RS00195 (HPKB_0038) crdS 36653..37855 (+) 1203 WP_079990907.1 copper-sensing histidine kinase CrdS -
  HPKB_RS00200 (HPKB_0039) - 37858..39252 (+) 1395 WP_000954041.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPKB_RS00205 (HPKB_0040) - 39263..40729 (+) 1467 WP_000349778.1 replicative DNA helicase -
  HPKB_RS00210 (HPKB_0041) comEC/comE3 40726..42039 (+) 1314 WP_000653539.1 ComEC/Rec2 family competence protein Machinery gene
  HPKB_RS00215 (HPKB_0042) mqnP 42110..42952 (+) 843 WP_228839862.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPKB_RS00220 (HPKB_0043) - 42945..43439 (+) 495 WP_042349022.1 hypothetical protein -
  HPKB_RS00225 (HPKB_0044) - 43452..43955 (+) 504 WP_000953117.1 DUF6115 domain-containing protein -
  HPKB_RS00230 (HPKB_0045) - 43952..44755 (+) 804 WP_000561113.1 phosphatidylserine decarboxylase -
  HPKB_RS00235 (HPKB_0046) nadA 44745..45755 (+) 1011 WP_001141819.1 quinolinate synthase NadA -
  HPKB_RS00240 (HPKB_0047) nadC 45755..46576 (+) 822 WP_000404072.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50223.21 Da        Isoelectric Point: 9.8366

>NTDB_id=46705 HPKB_RS00210 WP_000653539.1 40726..42039(+) (comEC/comE3) [Helicobacter pylori 52]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLILHAVDLGSLLDSILNMPLTIPTISVFSPLWLLGTHLFLT
ILSARFFKVYVSMNVLSVGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=46705 HPKB_RS00210 WP_000653539.1 40726..42039(+) (comEC/comE3) [Helicobacter pylori 52]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTATACCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGGGACAGGGCTAATGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TCTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTATTTTTCCCTTTGAGTTTAATCTTGCATGCTGTGGATTTGGGGTCTTTGTTGGATTCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGACGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATGTAAGCATGAATGTTTTGAGTGTGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941

Multiple sequence alignment